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LOC_000Q3M7.1
Download
Download FASTA
Download metadata TSV
Senegal/LOC_000Q3M7.1/1975
S. Ashraf,
H. Love,
C. Burton,
S. Carmichael,
A. D. Filipe,
S. Roddy,
K. Smollett,
S. Summers,
L. Tong,
K. S. Richards &
E. C. Thomson
University of Glasgow, MRC Centre for Virus Research
Sample details
Collection date
1975
Earliest release date
2022-12-10
Sampling location
Senegal
Isolate name
Dakar8692
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-06-12 15:19
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2022-12-10
INSDC accession L segment
OL774849.1
INSDC accession M segment
OL774850.1
INSDC accession S segment
OL774851.1
Host
Host
hard ticks; hardbacked ticks; scale ticks (Hyalomma rufipes)
Submission details
Submission ID
OL774849.1.L/OL774850.1.M/OL774851.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-12 15:19:09 UTC
Date released
2026-06-12 15:23:39 UTC
Clade & Lineage
Closest reference L segment
singleReference (variant)
Closest reference M segment
M (MH396653.1) (variant)
Closest reference S segment
S1 (OL774851.1)
Files
Annotations
LOC_000Q3M7.1.embl
Alignment and QC
Total SNPs L segment
231
Total inserted nucs L segment
48
Length L segment
12141 (99.9%)
Total SNPs M segment
688
Length M segment
5344 (97.9%)
Length S segment
1806 (100%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L segment
G
23
A
T
58
C
T
65
C
T
70
C
G
93
A
T
254
A
A
298
G
C
313
T
G
323
A
G
324
A
C
325
T
T
340
C
T
550
G
G
553
A
G
619
A
A
692
G
T
781
C
A
862
G
Show more
M segment
G
65
A
T
78
C
T
81
C
C
82
T
A
83
G
T
94
C
T
101
C
G
103
A
A
108
G
A
112
G
G
113
A
T
115
C
T
116
C
C
118
T
G
124
A
A
127
G
C
133
T
A
139
G
Show more
Deletions
N/A
Insertions
L segment
ins_12108:TTCATCATCATCGTTATTATCTTGGGGTGTGGGGGGAACGATTTCTTT
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
Y
7
C
GPC:
V
9
I
GPC:
F
10
L
GPC:
K
19
E
GPC:
N
21
H
GPC:
G
22
R
GPC:
P
23
S
GPC:
G
26
E
GPC:
E
28
R
GPC:
N
31
K
GPC:
H
33
D
GPC:
V
34
T
GPC:
D
39
G
GPC:
S
41
N
GPC:
Q
42
L
GPC:
P
44
S
GPC:
P
53
S
GPC:
V
54
T
Show more
RdRp
RdRp:
S
6
N
RdRp:
Y
60
N
RdRp:
G
83
N
RdRp:
N
206
D
RdRp:
I
505
T
RdRp:
K
522
R
RdRp:
T
767
A
RdRp:
S
782
G
RdRp:
K
809
R
RdRp:
G
812
E
RdRp:
T
876
S
RdRp:
A
1038
T
RdRp:
G
1047
E
RdRp:
Q
1174
H
RdRp:
V
1228
I
RdRp:
N
1367
D
RdRp:
P
1660
T
RdRp:
T
1675
N
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L segment
M segment
S segment
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