This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q3M7.1

South_Africa/LOC_000Q3M7.1/1988
K. Kondiah, R. Swanepoel, J. T. Paweska, F. J. Burt & B. Ashkettle

NHLS/UFS, Medical Virology

Sample details

Collection date
1988
Earliest release date
2008-12-30
Sampling location
South Africa
Isolate name
SPU 203/88

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2008-12-30
INSDC accession M segment

Host

Host

Submission details

Submission ID
FJ435387.1.M
Submitting group
Date submitted
2026-09-04 15:29:37 UTC
Date released
2026-09-04 15:31:04 UTC

Clade & Lineage

Closest reference M segment
M (MH396653.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs M segment
69
Total deleted nucs M segment
2
Length M segment
409 (7.53%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & MH396653.1 references

Substitutions

M segment

  • C4882T
  • A4889T
  • C4890T
  • A4891G
  • T4894C
  • C4895T
  • A4898G
  • T4906C
  • T4910C
  • T4921A
  • G4948A
  • C4957T
  • G4960A
  • C4966T
  • C4975T
  • A4984G
  • C4993T
  • C5002A
Deletions

M segment

5166, 5212
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & MH396653.1 references

Substitutions

GPC

  • GPC:T1601L
  • GPC:L1603F
  • GPC:T1604A
  • GPC:K1648R
  • GPC:K1672R
Deletions
N/A
Insertions
N/A

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