This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q3FL.1

India/LOC_000Q3FL.1/2019
P. Yadav, A. Shete-Aich, D. Nyayanit & R. Sahay

National Institute of Virology, Maximum Containment Laboratory

Sample details

Collection date
2019
Earliest release date
2021-08-07
Sampling location
India (Gujarat State, Rajkot)
Isolate name
MCL-19-H-3173

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2021-08-07
INSDC accession L

Host

Host

Submission details

Submission ID
MW298539.1.L
Submitting group
Date submitted
2026-10-30 18:26:46 UTC
Date released
2026-10-30 18:30:16 UTC

Files

Annotations

Alignment and QC

Total SNPs L
1647
Total inserted nucs L
42
Length L
12149 (100%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • T10C
  • G23T
  • A35G
  • G43T
  • T49C
  • C63G
  • C64T
  • T65C
  • T66C
  • T68C
  • G69A
  • G71C
  • C85T
  • G88A
  • G93A
  • A109G
  • C117A
  • A124G
Deletions
N/A
Insertions

L

ins_58:T, ins_11917:CA, ins_12083:TACTATCCTACTATTC, ins_12108:TTTATTATTTCTGGGGTGTGGGG

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

RdRp

  • RdRp:S6N
  • RdRp:A14D
  • RdRp:S19T
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:I114V
  • RdRp:T163A
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:A202V
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:I223V
  • RdRp:K275R
Deletions
N/A
Insertions
N/A

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