This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q3FL.1

USA/LOC_000Q3FL.1/2016-07-26
N. Grubaugh, Y. Fang, N. L. Matteson, K. Gangavarapu, L. Coffey, C. Barker & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2016-07-26
Earliest release date
2019-01-20
Sampling location
USA (Buttonwillow,California)
Isolate name
WNV/mosquito/Buttonwillow_CA_USA/2016-07-26/W485

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-25 13:21insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2019-01-20
NCBI update date
2019-01-20
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
MH508035.1
Submitting group
Date submitted
2026-06-25 13:21:41 UTC
Date released
2026-06-25 13:39:05 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
85
Length
10302 (93.4%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • 2K:S19G
  • NS2A:N214S
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:F119L
  • NS5:T25N
  • NS5:K177R
  • NS5:Q199R
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • G177A
  • C292T
  • C423T
  • A630G
  • C660T
  • C762T
  • T1442C
  • C1465T
  • A1527G
  • T1681C
  • C1878T
  • T1980C
  • C2080T
  • A2205G
  • A2208G
  • T2259C
  • C2448T
  • C2466T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

2K

  • 2K:S19G

NS2A

  • NS2A:N214S

NS4B

  • NS4B:F119L

NS5

  • NS5:T25N
  • NS5:Q199R

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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