This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q3FL.1

Saudi_Arabia/LOC_000Q3FL.1/2019
F. Zakham, A. E. Albalawi, A. D. Alanazi, P. Truong Nguyen, A. S. Alouffi, A. Alaoui, T. Sironen, T. Smura, O. Vapalahti & P. T. Truong Nguyen

University of Helsinki, Department of Virology

Sample details

Collection date
2019
Earliest release date
2021-09-06
Sampling location
Saudi Arabia (Al-Khurma)
Isolate name
KSA_7

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2021-09-06
INSDC accession S

Host

Host

Submission details

Submission ID
MZ566480.1.S
Submitting group
Date submitted
2026-07-07 12:47:52 UTC
Date released
2026-07-07 12:51:35 UTC

Lineage

Segment S Lineage
III

Files

Annotations

Alignment and QC

Total SNPs S
84
Length S
704 (42.1%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • G603T
  • T610C
  • T613A
  • G616A
  • C619T
  • T625C
  • C628A
  • G634A
  • A639G
  • T646C
  • A649G
  • C652G
  • C676T
  • A703G
  • C718T
  • A724G
  • C727T
  • A733G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:D186E
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:A271T
  • NP:D274E
  • NP:A285T
  • NP:S301G
  • NP:A307P
  • NP:L416P
  • NP:R417N
Deletions
N/A
Insertions
N/A

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