LOC_000Q3FL.1

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Uganda/LOC_000Q3FL.1/2021-04-27

L. Nyakarahuka, S. Whitmer, J. Kyondo, S. Mulei, C. M. Cossaboom, C. T. Telford, A. Tumusiime, G. G. Akurut, D. Namanya, K. Kamugisha, J. Baluku, J. Lutwama, S. Balinandi, T. Shoemaker, J. D. Klena & S. L. M. Whitmer

The Centers for Disease Control and Prevention, Viral Special Pathogens Branch

Sample details

Collection date

2021-04-27

Earliest release date

2022-10-19

Sampling location

Uganda (Kikuube district)

Isolate name

2021000741

Data use terms

Changed	User	Data use terms
2026-06-23 14:57	insdc_ingest_user	OPEN

OPEN

Data use terms URL

https://#TODO-MVP/open

INSDC

NCBI release date

2022-10-19

INSDC accession M

OL690430.1

INSDC accession S

OL690431.1

Host

human (Homo sapiens)

Submission details

Submission ID

OL690430.1.M/OL690431.1.S

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-06-23 14:57:32 UTC

Date released

2026-06-23 15:02:02 UTC

Lineage

Segment S Lineage

Files

Annotations

LOC_000Q3FL.1.embl

Alignment and QC

Total SNPs M

1289

Total inserted nucs M

Total deleted nucs M

Total ambiguous nucs M

Total unknown nucs M

967

Length M

5348 (81.2%)

Total SNPs S

251

Total inserted nucs S

Total deleted nucs S

Total ambiguous nucs S

Total unknown nucs S

Length S

1568 (90.7%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

G50T
A51G
A52T
T54C
G55A
G56T
A57T
T58A
T59A
A61G
T65A
A69G
A70T
T71A
T72G
G76A
T79C
A80G

S

A50G
G54A
A61G
C64T
G67A
A78C
A81G
A85G
A118G
G122A
A124C
A130T
G136A
T144A
C154T
T157C
C166T
T175C

Deletions

M

162-164, 726-740, 5162-5191

S

1516

Insertions

M

ins_398:CAGGAGACAAAAATACACATGACTCAG, ins_443:ACCATATCGGTTAAA, ins_471:TTCCACAAG, ins_5290:TAGCTTATGATAGTTGATC

S

ins_1581:C

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references