This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q3AW.1

USA/LOC_000Q3AW.1
L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Earliest release date
2022-07-30
Sampling location
USA (MD)
Isolate name
IbAr10200

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2022-07-30
INSDC accession M
BioProject accession
BioSample accession
Raw reads accession

Submission details

Submission ID
OK573219.1.M
Submitting group
Date submitted
2026-07-01 08:37:34 UTC
Date released
2026-07-01 08:42:15 UTC

Files

Annotations

Alignment and QC

Total SNPs M
35
Total deleted nucs M
32
Total frame shifts M
1
Frame shifts M
GPC:138-1685(nt:503-5147)
Length M
4542 (85.2%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • A438G
  • C439G
  • A440T
  • C442T
  • C443T
  • G445A
  • A446T
  • G448T
  • C449T
  • A450T
  • C452A
  • C455T
  • C457G
  • A458C
  • A462G
  • C463G
  • G465C
  • C468G
Deletions

M

474-502, 533-535
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:D109G
  • GPC:P112V
  • GPC:T114S
  • GPC:Q115G
  • GPC:T116P
  • GPC:A117G
  • GPC:G118L
  • GPC:G119V
Deletions

GPC

GPC:128-137
Insertions
N/A

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