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LOC_000Q380.1
Download
Download FASTA
Download metadata TSV
China/LOC_000Q380.1/2004
A. Moming,
Q. Zhu,
Y. Bai,
J. Jin,
Q. Wu,
Z. Su,
S. Tang,
Y. Zhang,
S. Shen &
F. Deng
Wuhan Institute of Virology, Chinese Academy of Sciences
Sample details
Collection date
2004
Earliest release date
2023-08-21
Sampling location
China
Isolate name
BA04032
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-02-27 15:36
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2023-08-21
INSDC accession L
OR047178.1
INSDC accession M
OR047158.1
INSDC accession S
OR047138.1
Submission details
Submission ID
OR047178.1.L/OR047158.1.M/OR047138.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-27 15:36:26 UTC
Date released
2026-02-27 15:40:27 UTC
Host
Host
Ixodoidea
Files
Annotations
LOC_000Q380.1.embl
Alignment and QC
Total SNPs L
1538
Total inserted nucs L
124
Length L
12232 (100%)
Variant L
False
Total SNPs S
232
Total inserted nucs S
16
Length S
1673 (91.7%)
Variant S
False
Length M
5401 (100%)
Variant M
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
OR047158.1
&
OL774851.1
references
Substitutions
L segment
T
10
C
G
23
T
A
35
G
G
43
C
T
49
C
A
50
G
C
63
G
C
64
T
T
65
C
T
66
C
G
69
A
G
71
T
G
88
A
G
93
A
A
109
G
T
131
A
T
139
C
T
151
C
Show more
S segment
T
16
A
C
22
A
C
31
G
T
32
C
G
34
A
G
35
A
A
45
G
A
51
G
C
81
T
A
84
G
A
98
T
A
102
G
C
126
T
T
141
C
C
150
T
T
166
C
C
171
T
A
173
G
Show more
Deletions
N/A
Insertions
L segment
ins_58:T, ins_11922:TC, ins_12108:TTTCATTTTCACTATTTCCAGTTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATG
S segment
ins_0:TCTCAAAGAAACACGT
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
OR047158.1
&
OL774851.1
references
Substitutions
NP
NP:
Y
20
F
NP:
K
45
R
NP:
D
116
E
NP:
N
125
D
NP:
A
146
T
NP:
N
150
H
NP:
Q
179
L
NP:
D
199
E
NP:
D
262
N
NP:
R
270
K
NP:
M
353
L
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
E
126
D
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
218
R
RdRp:
I
223
M
RdRp:
K
275
R
Show more
Deletions
N/A
Insertions
N/A
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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