This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q32C.1

Germany/LOC_000Q32C.1/2018-01-01
U. Ziegler, R. Luhken, M. Keller, D. Cadar, E. van der Grinten, F. Michel, K. Albrecht, M. Eiden, M. Rinder, L. Lachmann, D. Hoper, A. Vina-Rodriguez, W. Gaede, A. Pohl, J. Schmidt-Chanasit, M. H. Groschup & M. Groschup

Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Institute of Novel and Emerging Infectious Diseases

Sample details

Collection date
2018
Earliest release date
2018-12-29
Sampling location
Germany
Isolate name
ED-I-89/18-UM

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-12 21:23insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2018-12-29
NCBI update date
2018-12-29
INSDC accession

Host

Host

Submission details

Submission ID
MH974750.1
Submitting group
Date submitted
2026-05-12 21:23:44 UTC
Date released
2026-05-12 21:46:56 UTC

Lineage

Lineage
2

Files

Annotations

Alignment and QC

Total SNPs
196
Length
971 (8.8%)
Amino Acid Mutations from founder clade
  • NS5:K527R
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C9123A
  • A9126G
  • T9129C
  • T9135C
  • C9144T
  • G9147A
  • G9153C
  • T9156A
  • T9159C
  • T9180G
  • A9183T
  • A9186G
  • G9189A
  • T9204A
  • C9207T
  • G9210A
  • G9216A
  • C9219A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS5

  • NS5:R522K
  • NS5:R546K
  • NS5:A569S
  • NS5:R590K
  • NS5:T641G
  • NS5:V740I
Deletions
N/A
Insertions
N/A

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