This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
SeqSets
Login
Loculus
Organisms
CCHF (Multi-Ref)
Crimean-Congo Hemorrhagic Fever Virus
Ebola Sudan
Enterovirus
Test Dummy Organism
Test organism (with files)
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
Crimean-Congo Hemorrhagic Fever Virus
|
Browse data
Submit sequences
Select organism section
Browse data
Submit sequences
LOC_000Q2TW.1
Download
Download FASTA
Download metadata TSV
South_Africa/LOC_000Q2TW.1/1985
V. M. Deyde,
M. L. Khristova,
P. E. Rollin,
T. G. Ksiazek &
S. T. Nichol
Centers for Disease Control and Prevention, Special Pathogens Branch, Biotechnology Core Facility Branch
Sample details
Collection date
1985
Earliest release date
2006-08-16
Sampling location
South Africa
Isolate name
SPU97/85
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2006-08-16
INSDC accession L
DQ211620.1
INSDC accession M
DQ211633.1
INSDC accession S
DQ211646.1
Host
Host
human (Homo sapiens)
Is lab host
True
Submission details
Submission ID
DQ211620.1.L/DQ211633.1.M/DQ211646.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-11-06 16:58:19 UTC
Date released
2026-11-06 16:59:20 UTC
Lineage
Segment S Lineage
III
Files
Annotations
LOC_000Q2TW.1.embl
Alignment and QC
Total SNPs M
1026
Total inserted nucs M
1
Total deleted nucs M
13
Length M
5354 (100%)
Total SNPs L
635
Total inserted nucs L
49
Length L
12157 (100%)
Total SNPs S
125
Total inserted nucs S
1
Length S
1673 (100%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
G
23
A
A
35
T
T
49
C
C
63
G
T
65
C
T
70
C
G
80
A
G
93
A
C
94
T
T
118
C
T
163
C
T
214
C
T
229
C
T
253
C
T
254
A
C
266
T
C
313
T
C
326
T
Show more
M
G
50
T
A
51
G
A
57
C
C
66
T
A
69
G
A
70
G
T
71
A
G
73
T
A
80
G
C
81
A
T
83
C
C
85
T
T
86
C
T
91
C
C
92
T
A
93
G
C
96
T
A
97
G
Show more
S
G
54
A
G
67
A
A
85
G
A
124
G
T
127
C
C
166
T
C
178
A
G
190
A
G
196
A
T
199
C
G
202
A
A
209
G
C
217
T
G
229
A
C
244
T
G
271
A
T
289
C
C
295
T
Show more
Deletions
M
5280-5292
Insertions
L
ins_12108:TTCATCATTGTTATTATTTTGGGGTGTGGGGGGAACGATTTCTTTGAGA
M
ins_5170:G
S
ins_1577:A
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
M
1
V
GPC:
H
2
C
GPC:
I
3
T
GPC:
S
4
P
GPC:
M
6
V
GPC:
Y
7
C
GPC:
I
9
V
GPC:
L
10
F
GPC:
C
15
W
GPC:
G
16
N
GPC:
E
19
G
GPC:
H
21
L
GPC:
G
22
V
GPC:
S
23
P
GPC:
H
24
T
GPC:
E
26
R
GPC:
R
28
Q
GPC:
D
33
G
Show more
NP
NP:
S
52
G
NP:
T
124
A
NP:
G
125
N
NP:
L
179
Q
NP:
H
195
R
NP:
I
246
V
NP:
S
301
G
NP:
V
436
I
RdRp
RdRp:
D
2
N
RdRp:
S
6
N
RdRp:
Y
60
N
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
N
206
Y
RdRp:
Q
445
H
RdRp:
I
505
T
RdRp:
R
611
K
RdRp:
R
764
K
RdRp:
T
767
A
RdRp:
R
770
K
RdRp:
N
779
S
RdRp:
I
783
T
RdRp:
S
789
T
RdRp:
K
809
R
RdRp:
G
812
E
RdRp:
T
876
S
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Reference-aligned nucleotide sequences
Reference-aligned amino acid sequences
L
M
S
Report an issue with this sequence or metadata
Create GitHub issue