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LOC_000Q2M8.1
Download
Download FASTA
Download metadata TSV
United_Arab_Emirates/LOC_000Q2M8.1/2019
J. V. Camp,
P. Weidinger,
S. Ramaswamy,
D. O. Kannan,
B. M. Osman,
J. Kolodziejek,
N. Karuvantevida,
A. Abou Tayoun,
T. Loney,
N. Nowotny &
N. Wolf
Medical University of Vienna, Center for Virology
Sample details
Collection date
2019
Earliest release date
2022-02-22
Sampling location
United Arab Emirates (Al Ain)
Isolate name
UAE/CT219M3/2019
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2022-02-22
INSDC accession L
MW548504.1
INSDC accession M
MW548499.1
INSDC accession S
MW548494.1
Host
Host
hard ticks; hardbacked ticks; scale ticks (Hyalomma dromedarii)
Submission details
Submission ID
MW548504.1.L/MW548499.1.M/MW548494.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-08-05 15:16:42 UTC
Date released
2026-08-05 15:20:38 UTC
Lineage
Segment S Lineage
III
Files
Annotations
LOC_000Q2M8.1.embl
Alignment and QC
Total SNPs L
1691
Total inserted nucs L
28
Total deleted nucs L
10
Length L
12122 (100%)
Total SNPs M
1635
Total inserted nucs M
9
Total deleted nucs M
46
Length M
5286 (99.2%)
Total SNPs S
204
Total inserted nucs S
3
Length S
1663 (99.3%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
T
10
C
G
23
T
T
24
A
G
32
T
A
35
G
A
40
T
G
41
A
G
43
C
T
47
C
C
48
T
T
49
C
A
53
G
G
57
T
C
59
T
T
60
C
T
61
C
C
63
G
C
64
T
Show more
M
G
38
A
T
40
A
A
48
T
G
50
A
A
51
G
A
52
T
G
56
A
T
58
A
T
59
A
G
60
A
A
61
G
G
62
C
A
64
T
C
66
A
T
68
C
A
69
C
A
70
C
T
71
C
Show more
S
G
54
A
C
64
T
A
66
G
G
67
A
T
79
C
C
82
T
A
109
G
G
134
A
T
135
C
G
136
A
A
148
T
C
166
T
C
178
A
T
181
C
G
184
A
C
187
A
G
190
A
G
196
A
Show more
Deletions
L
12029-12032, 12066-12071
M
140-142, 5165-5176, 5263-5290, 5329-5331
Insertions
L
ins_11927:GC, ins_12108:TTACAAGGGTGTGGGGGGAACGATTT
M
ins_347:CAACCA, ins_594:CGG
S
ins_1580:C, ins_1594:CA
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
M
1
T
GPC:
H
2
F
GPC:
I
3
V
GPC:
M
6
G
GPC:
Y
7
F
GPC:
A
8
L
GPC:
L
12
Q
GPC:
L
14
P
GPC:
C
15
W
GPC:
G
16
A
GPC:
L
17
A
GPC:
G
18
E
GPC:
E
19
A
GPC:
T
20
K
GPC:
H
21
A
GPC:
G
22
W
GPC:
S
23
T
GPC:
N
25
T
Show more
NP
NP:
K
4
R
NP:
V
27
T
NP:
D
44
E
NP:
V
83
A
NP:
T
124
A
NP:
G
125
S
NP:
A
154
S
NP:
L
179
Q
NP:
D
186
E
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
A
271
T
NP:
D
274
E
NP:
S
301
G
NP:
A
307
P
NP:
K
428
R
NP:
V
436
I
NP:
N
442
S
RdRp
RdRp:
D
8
N
RdRp:
S
19
T
RdRp:
N
24
S
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
RdRp:
T
163
V
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
I
176
M
RdRp:
A
177
T
RdRp:
S
201
G
RdRp:
A
202
V
RdRp:
S
205
P
RdRp:
N
206
C
RdRp:
L
216
I
RdRp:
K
219
R
Show more
Deletions
GPC
GPC:56-64
Insertions
GPC
ins_GPC:23:SPKADVSN, ins_GPC:130:AA, ins_GPC:172:N
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
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