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LOC_000Q2M8.1
Download
Download FASTA
Download metadata TSV
Senegal/LOC_000Q2M8.1/1972
V. M. Deyde,
M. L. Khristova,
P. E. Rollin,
T. G. Ksiazek &
S. T. Nichol
Centers for Disease Control and Prevention, Special Pathogens Branch, Biotechnology Core Facility Branch
Sample details
Collection date
1972
Earliest release date
2006-08-16
Sampling location
Senegal
Isolate name
ArD15786
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2006-08-16
INSDC accession L
DQ211614.1
INSDC accession M
DQ211627.1
INSDC accession S
DQ211640.1
Host
Host
domestic goat; goat; goats (Capra hircus)
Submission details
Submission ID
DQ211614.1.L/DQ211627.1.M/DQ211640.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-11-06 16:58:19 UTC
Date released
2026-11-06 16:59:20 UTC
Lineage
Segment S Lineage
I
Files
Annotations
LOC_000Q2M8.1.embl
Alignment and QC
Total SNPs M
1559
Total inserted nucs M
54
Total deleted nucs M
34
Length M
5386 (100%)
Total SNPs S
315
Total inserted nucs S
17
Total deleted nucs S
3
Length S
1686 (100%)
Total SNPs L
257
Total inserted nucs L
52
Length L
12160 (100%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
T
65
C
T
67
C
T
70
C
G
93
A
G
226
A
T
241
C
C
244
T
T
254
A
A
298
G
A
310
G
C
313
T
T
340
C
C
427
A
G
457
A
T
550
G
G
553
A
G
619
A
T
781
C
Show more
M
G
50
T
A
51
G
A
52
T
G
56
T
A
57
G
T
58
A
T
59
A
G
60
A
A
64
G
T
65
A
C
66
T
A
69
G
A
70
T
T
71
G
T
72
A
C
74
G
G
76
A
A
80
G
Show more
S
C
38
A
T
39
C
G
54
A
A
61
G
G
67
A
G
73
A
T
79
C
A
92
C
G
99
A
G
100
A
A
109
G
A
118
G
T
127
C
A
130
G
C
139
T
C
142
T
C
160
T
T
163
C
Show more
Deletions
M
162-164, 792-809, 5282-5294
S
1512-1514
Insertions
L
ins_12108:TTCATCATCATCGTTATTATCTTGGGGTGTGGGGGGAACGATTTCTTTGAGA
M
ins_236:CTGGAGTCATCAACA, ins_359:ACTTCTATCGCCACCATCAAAACACAAGAGTCAGAA, ins_722:ATT
S
ins_1582:TTGCAGTTACCAAAAC, ins_1616:A
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
M
1
K
GPC:
H
2
F
GPC:
I
3
V
GPC:
S
4
L
GPC:
M
6
T
GPC:
Y
7
N
GPC:
A
8
F
GPC:
I
9
F
GPC:
L
10
F
GPC:
L
12
Q
GPC:
Q
13
L
GPC:
C
15
W
GPC:
L
17
G
GPC:
E
19
G
GPC:
T
20
V
GPC:
R
28
S
GPC:
H
29
G
GPC:
N
30
G
Show more
NP
NP:
M
13
L
NP:
R
15
K
NP:
S
39
N
NP:
S
52
G
NP:
F
73
Y
NP:
K
91
R
NP:
A
100
T
NP:
T
124
A
NP:
G
125
N
NP:
A
154
S
NP:
H
195
K
NP:
V
198
I
NP:
D
199
E
NP:
I
220
V
NP:
I
246
V
NP:
D
248
E
NP:
N
258
K
NP:
G
259
E
Show more
RdRp
RdRp:
S
6
N
RdRp:
M
50
I
RdRp:
Y
60
N
RdRp:
D
264
E
RdRp:
I
505
T
RdRp:
R
764
K
RdRp:
T
767
A
RdRp:
K
769
I
RdRp:
P
774
S
RdRp:
I
783
T
RdRp:
G
812
E
RdRp:
T
876
S
RdRp:
V
882
I
RdRp:
G
1047
E
RdRp:
G
1214
S
RdRp:
V
1228
I
RdRp:
N
1367
D
RdRp:
V
1601
I
Show more
Deletions
GPC
GPC:21-26, GPC:183-187
Insertions
GPC
ins_GPC:61:AETVPSTTIN, ins_GPC:92:ATIKTQESETRR
Nucleotide sequences
Reference-aligned nucleotide sequences
Reference-aligned amino acid sequences
L
M
S
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