This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q2M8.1

Uganda/LOC_000Q2M8.1/2013-08-08
S. Balinandi, S. Whitmer, S. Mulei, L. Nyakarahuka, A. Tumusiime, J. Kyondo, L. Mugisha, M. Almberg, J. Lutwama, T. Shoemaker & J. D. Klena

CDC, VSPB

Sample details

Collection date
2013-08-08
Earliest release date
2021-09-19
Sampling location
Uganda
Isolate name
201301845

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2021-09-19
INSDC accession S

Host

Host

Submission details

Submission ID
MW464943.1.S
Submitting group
Date submitted
2026-09-29 08:26:24 UTC
Date released
2026-09-29 08:31:07 UTC

Lineage

Segment S Lineage
II

Files

Annotations

Alignment and QC

Total SNPs S
254
Total inserted nucs S
1
Total ambiguous nucs S
6
Length S
1537 (91.5%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • A78C
  • A81G
  • A85G
  • A109G
  • A118G
  • G122A
  • A124C
  • A130T
  • G136A
  • T144A
  • C154T
  • T157C
  • C166T
  • T175C
  • T181C
  • T182C
  • G184T
  • T199C
Deletions
N/A
Insertions

S

ins_1581:C

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:N8T
  • NP:N9S
  • NP:G23S
  • NP:F30Y
  • NP:D116G
  • NP:T124A
  • NP:G125N
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:S275N
  • NP:I277V
  • NP:S301G
  • NP:A307P
  • NP:Y311F
  • NP:T320S
  • NP:Q370E
  • NP:V436I
Deletions
N/A
Insertions
N/A

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