This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q2M8.1

USA/CpOc01/2005-07-26
L. Bertolotti, E. D. Walker, J. Brawn, M. O. Ruiz, G. L. Hamer, S. Loss, U. Kitron & T. L. Goldberg

University of Illinois at Urbana Champaign, Department of Pathobiology

Sample details

Collection date
2005-07-26
Earliest release date
2008-05-31
Sampling location
USA (Illinois, Cook County)
Isolate name
CpOc01

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-08 13:15insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2008-05-31
NCBI update date
2016-07-26
INSDC accession

Host

Host

Submission details

Submission ID
EF631083.1
Submitting group
Date submitted
2026-05-08 13:14:11 UTC
Date released
2026-05-08 13:23:02 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
8
Length
1575 (14.3%)
Amino Acid Mutations from founder clade
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T1368C
  • C1386T
  • T1442C
  • C1465T
  • C2040T
  • C2316T
  • T2430C
  • C2466T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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