This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q2GK.1

India/LOC_000Q2GK.1/2019
P. Yadav, A. Shete-Aich, D. Nyayanit & R. Sahay

National Institute of Virology, Maximum Containment Laboratory

Sample details

Collection date
2019
Earliest release date
2021-08-07
Sampling location
India (Gujarat State, Bhavnagar)
Isolate name
MCL-19-H-3173

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2021-08-07
INSDC accession M

Host

Host

Submission details

Submission ID
MW298543.1.M
Submitting group
Date submitted
2026-09-30 15:40:47 UTC
Date released
2026-09-30 15:45:40 UTC

Files

Annotations

Alignment and QC

Total SNPs M
1557
Total inserted nucs M
57
Total deleted nucs M
39
Length M
5345 (99.3%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • G50C
  • A51G
  • A52T
  • G56T
  • T58A
  • T59A
  • T65A
  • C66T
  • T67C
  • A69G
  • A70T
  • T71G
  • T72A
  • G76A
  • A80G
  • C81T
  • C82T
  • T83G
Deletions

M

297-305, 628-630, 678-689, 5172-5186
Insertions

M

ins_236:CCGTCAACAGACACTGCC, ins_365:GTTGCCATTGTCCAAACACAAGAAACAGAAGCACCC, ins_5202:CA, ins_5248:C

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:M1S
  • GPC:H2M
  • GPC:I3L
  • GPC:S4L
  • GPC:L5T
  • GPC:M6N
  • GPC:Y7F
  • GPC:A8I
  • GPC:I9L
  • GPC:L10C
  • GPC:C11Q
  • GPC:Q13F
  • GPC:L14W
  • GPC:C15S
  • GPC:L17S
  • GPC:E19V
  • GPC:H21S
  • GPC:S23G
Deletions

GPC

GPC:176-210
Insertions

GPC

ins_GPC:77:ESSTDPSVTNKDTSP, ins_GPC:229:NTTGQTNPTTLVTSPKTQTIQGQQTTTPVT

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