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LOC_000Q281.1
Download
Download FASTA
Download metadata TSV
Uganda/LOC_000Q281.1/2019-07-22
S. Balinandi,
S. Whitmer,
S. Mulei,
L. Nyakarahuka,
A. Tumusiime,
J. Kyondo,
L. Mugisha,
M. Almberg,
J. Lutwama,
T. Shoemaker &
J. D. Klena
CDC, VSPB
Sample details
Collection date
2019-07-22
Earliest release date
2021-09-19
Sampling location
Uganda
Isolate name
2019000821
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2021-09-19
INSDC accession L segment
MW464985.1
INSDC accession S segment
MW464986.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
MW464985.1.L/MW464986.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-07-10 15:20:24 UTC
Date released
2026-07-10 15:24:23 UTC
Clade & Lineage
Closest reference L segment
singleReference (variant)
Closest reference S segment
S1 (OL774851.1) (variant)
Files
Annotations
LOC_000Q281.1.embl
Alignment and QC
Total SNPs L segment
1561
Total inserted nucs L segment
1
Total ambiguous nucs L segment
4
Total unknown nucs L segment
2450
Length L segment
11807 (77.2%)
Total SNPs S segment
229
Total unknown nucs S segment
52
Length S segment
1495 (79.9%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
&
OL774851.1
references
Substitutions
L segment
G
23
T
A
35
G
A
42
G
G
43
T
C
48
T
A
50
G
A
53
G
G
57
C
C
59
T
C
63
G
T
65
C
G
71
T
A
72
G
A
73
G
C
82
A
G
93
A
A
109
G
T
115
C
Show more
S segment
C
31
G
A
45
G
C
48
T
A
62
C
A
65
G
A
69
G
A
83
G
A
84
G
A
93
G
A
98
T
A
102
G
G
106
A
A
108
C
A
114
T
G
120
A
T
128
A
C
138
T
T
141
C
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Deletions
N/A
Insertions
L segment
ins_60:C
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
&
OL774851.1
references
Substitutions
NP
NP:
N
8
T
NP:
N
9
S
NP:
K
15
R
NP:
Y
20
F
NP:
G
23
S
NP:
F
30
Y
NP:
K
45
R
NP:
T
111
A
NP:
D
116
G
NP:
Q
179
L
NP:
D
199
E
NP:
R
270
K
NP:
S
275
N
NP:
I
277
V
NP:
A
307
P
NP:
Y
311
F
NP:
T
320
S
NP:
Q
370
E
NP:
R
428
K
RdRp
RdRp:
D
2
E
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
S
67
E
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
E
87
D
RdRp:
I
114
V
RdRp:
I
131
L
RdRp:
T
163
A
RdRp:
R
166
K
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
A
399
S
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L segment
S segment
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