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LOC_000Q281.1
Download
Download FASTA
Download metadata TSV
India/LOC_000Q281.1/2019
P. Yadav,
A. Shete-Aich,
D. Nyayanit &
R. Sahay
National Institute of Virology, Maximum Containment Laboratory
Sample details
Collection date
2019
Earliest release date
2021-08-07
Sampling location
India (Gujarat State, Bhavnagar)
Isolate name
MCL-19-H-3110
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2021-08-07
INSDC accession L
MW298534.1
INSDC accession M
MW298540.1
INSDC accession S
MW298548.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
MW298534.1.L/MW298540.1.M/MW298548.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-09-30 15:40:47 UTC
Date released
2026-09-30 15:45:40 UTC
Lineage
Segment S Lineage
IV.2
Files
Annotations
LOC_000Q281.1.embl
Alignment and QC
Total SNPs L
1574
Total inserted nucs L
2
Length L
11932 (98.5%)
Total SNPs M
678
Total inserted nucs M
1
Length M
5337 (99.4%)
Total SNPs S
216
Total inserted nucs S
1
Length S
1634 (97.7%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
T
10
C
G
23
T
A
35
G
G
43
C
C
48
T
T
49
C
C
59
T
C
64
T
T
65
G
G
71
T
A
72
T
C
85
T
G
93
A
A
109
G
G
112
A
T
121
C
T
131
A
C
136
T
Show more
M
G
55
A
A
57
G
G
76
A
C
85
T
T
86
C
A
101
G
A
107
G
A
117
G
C
119
T
C
120
T
T
122
C
C
126
T
A
128
G
G
143
A
A
146
G
G
147
A
G
149
A
T
152
C
Show more
S
T
48
C
A
61
G
C
64
T
G
67
A
G
99
A
A
118
G
C
142
T
T
157
C
C
166
T
G
169
A
C
178
A
T
182
C
C
217
T
G
229
A
C
235
T
T
250
A
G
262
A
A
268
C
Show more
Deletions
N/A
Insertions
L
ins_66:CC
M
ins_5169:G
S
ins_1577:A
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
I
3
M
GPC:
I
9
V
GPC:
L
10
F
GPC:
E
19
K
GPC:
E
26
G
GPC:
R
28
G
GPC:
T
34
V
GPC:
N
41
S
GPC:
P
42
Q
GPC:
S
44
P
GPC:
P
47
L
GPC:
S
53
P
GPC:
I
54
F
GPC:
L
56
P
GPC:
P
66
L
GPC:
G
69
R
GPC:
V
76
P
GPC:
I
82
A
Show more
NP
NP:
R
15
K
NP:
D
116
E
NP:
T
124
A
NP:
G
125
N
NP:
N
150
H
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
A
271
S
NP:
S
275
N
NP:
S
301
G
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
L
90
I
RdRp:
I
114
V
RdRp:
I
157
M
RdRp:
T
163
V
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
V
214
I
RdRp:
K
275
R
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Reference-aligned nucleotide sequences
Reference-aligned amino acid sequences
L
M
S
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