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LOC_000Q281.1
Download
Download FASTA
Download metadata TSV
Uganda/LOC_000Q281.1/2018-07-14
S. Balinandi,
S. Whitmer,
S. Mulei,
L. Nyakarahuka,
A. Tumusiime,
J. Kyondo,
L. Mugisha,
M. Almberg,
J. Lutwama,
T. Shoemaker &
J. D. Klena
CDC, VSPB
Sample details
Collection date
2018-07-14
Earliest release date
2021-09-19
Sampling location
Uganda
Isolate name
201900905
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2021-09-19
INSDC accession L segment
MW464967.1
INSDC accession S segment
MW464968.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
MW464967.1.L/MW464968.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-07-20 11:52:13 UTC
Date released
2026-07-20 11:56:18 UTC
Clade & Lineage
Closest reference L segment
singleReference (variant)
Closest reference S segment
S1 (OL774851.1) (variant)
Files
Annotations
LOC_000Q281.1.embl
Alignment and QC
Total SNPs S segment
283
Total inserted nucs S segment
2
Total deleted nucs S segment
1
Total ambiguous nucs S segment
1
Length S segment
1637 (90.5%)
Total SNPs L segment
1731
Total inserted nucs L segment
1
Total ambiguous nucs L segment
5
Total unknown nucs L segment
1093
Length L segment
11648 (87.1%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
&
OL774851.1
references
Substitutions
L segment
G
23
T
A
35
G
A
42
G
G
43
T
C
48
T
A
53
G
G
57
C
C
59
T
C
63
G
T
65
C
G
71
T
A
72
G
A
73
G
C
82
A
G
93
A
A
109
G
T
115
C
T
131
A
Show more
S segment
T
16
A
C
31
G
A
45
G
C
48
T
A
62
C
A
65
G
A
69
G
A
83
G
A
84
G
A
93
G
A
98
T
A
102
G
G
106
A
A
108
C
A
114
T
G
120
A
T
128
A
C
138
T
Show more
Deletions
S segment
1596
Insertions
L segment
ins_60:C
S segment
ins_0:GT
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
&
OL774851.1
references
Substitutions
NP
NP:
N
8
T
NP:
N
9
S
NP:
K
15
R
NP:
Y
20
F
NP:
G
23
S
NP:
F
30
Y
NP:
K
45
R
NP:
D
116
G
NP:
Q
179
L
NP:
D
199
E
NP:
R
270
K
NP:
S
275
N
NP:
I
277
V
NP:
A
307
P
NP:
Y
311
F
NP:
T
320
S
NP:
Q
370
E
NP:
R
428
K
RdRp
RdRp:
D
2
E
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
S
67
E
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
I
131
L
RdRp:
T
163
A
RdRp:
R
166
K
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
201
G
RdRp:
A
202
P
RdRp:
S
205
P
RdRp:
N
206
Y
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L segment
S segment
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