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LOC_000Q257.1
Download
Download FASTA
Download metadata TSV
Uganda/LOC_000Q257.1/2018-07-12
S. Balinandi,
S. Whitmer,
S. Mulei,
L. Nyakarahuka,
A. Tumusiime,
J. Kyondo,
L. Mugisha,
M. Almberg,
J. Lutwama,
T. Shoemaker &
J. D. Klena
CDC, VSPB
Sample details
Collection date
2018-07-12
Earliest release date
2021-09-19
Sampling location
Uganda
Isolate name
201902740
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2021-09-19
INSDC accession L
MW464979.1
INSDC accession M
MW464980.1
INSDC accession S
MW464981.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
MW464979.1.L/MW464980.1.M/MW464981.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-07-07 12:47:52 UTC
Date released
2026-07-07 12:51:35 UTC
Lineage
Segment S Lineage
II
Files
Annotations
LOC_000Q257.1.embl
Alignment and QC
Total SNPs M
1366
Total inserted nucs M
16
Total deleted nucs M
43
Length M
4861 (91.1%)
Total SNPs S
274
Total inserted nucs S
1
Total deleted nucs S
1
Length S
1617 (96.7%)
Total SNPs L
2016
Total inserted nucs L
3
Length L
12011 (99.2%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
G
23
T
A
35
G
A
42
G
G
43
T
C
48
T
A
53
G
G
57
C
C
59
T
C
63
G
T
65
C
G
71
T
A
72
G
A
73
G
C
82
A
G
93
A
A
109
G
T
115
C
T
131
A
Show more
M
A
464
C
G
465
C
T
466
C
C
467
A
G
469
A
C
470
G
A
471
G
G
475
A
T
476
C
C
477
A
T
478
C
C
480
T
C
482
A
A
483
T
A
484
T
T
491
C
C
496
A
C
498
G
Show more
S
A
50
G
G
54
A
A
61
G
C
64
T
G
67
A
A
78
C
A
81
G
A
85
G
A
109
G
A
118
G
G
122
A
A
124
C
A
130
T
G
136
A
T
144
A
C
154
T
T
157
C
C
166
T
Show more
Deletions
M
645-659, 5263-5290
S
1611
Insertions
L
ins_60:C, ins_11931:AT
M
ins_5200:ATGCTTTCCCGCTAAA
S
ins_1581:C
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
V
125
P
GPC:
R
126
Q
GPC:
T
127
A
GPC:
S
128
N
GPC:
L
129
T
GPC:
P
130
S
GPC:
N
131
F
GPC:
T
135
K
GPC:
P
136
A
GPC:
S
137
P
GPC:
T
138
I
GPC:
P
139
S
GPC:
Q
140
P
GPC:
D
141
T
GPC:
P
145
H
GPC:
V
146
S
GPC:
N
148
S
GPC:
V
152
A
Show more
NP
NP:
N
8
T
NP:
N
9
S
NP:
G
23
S
NP:
F
30
Y
NP:
D
116
G
NP:
T
124
A
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
275
N
NP:
I
277
V
NP:
S
301
G
NP:
A
307
P
NP:
Y
311
F
NP:
T
320
S
NP:
Q
370
E
NP:
V
436
I
RdRp
RdRp:
D
2
E
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
S
67
E
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
I
131
L
RdRp:
T
163
A
RdRp:
R
166
K
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
201
G
RdRp:
A
202
P
RdRp:
S
205
P
RdRp:
N
206
Y
Show more
Deletions
GPC
GPC:194-198
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
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