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LOC_000Q257.1
Download
Download FASTA
Download metadata TSV
Uganda/LOC_000Q257.1/2019
E. M. Wampande,
P. Waiswa,
D. J. Allen,
R. Hewson,
S. D. W. Frost &
S. C. B. Stubbs
London School of Hygiene and Tropical Medicine, Infectious Disease Epidemiology
Sample details
Collection date
2019
Earliest release date
2021-02-10
Sampling location
Uganda (Kampala)
Isolate name
CW-024
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2021-02-10
INSDC accession L segment
MW452935.1
INSDC accession M segment
MW452934.1
INSDC accession S segment
MW452933.1
Host
Host
hard ticks; hardbacked ticks; scale ticks (Rhipicephalus decoloratus)
Submission details
Submission ID
MW452935.1.L/MW452934.1.M/MW452933.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-09-03 08:54:09 UTC
Date released
2026-09-03 08:56:04 UTC
Clade & Lineage
Closest reference L segment
singleReference (variant)
Closest reference M segment
M (OR047158.1) (variant)
Closest reference S segment
S1 (OL774851.1) (variant)
Files
Annotations
LOC_000Q257.1.embl
Alignment and QC
Total SNPs M segment
1328
Total inserted nucs M segment
51
Total deleted nucs M segment
21
Length M segment
5431 (100%)
Total SNPs S segment
280
Total inserted nucs S segment
5
Length S segment
1662 (91.7%)
Total SNPs L segment
1944
Length L segment
11838 (97.8%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
OR047158.1
&
OL774851.1
references
Substitutions
L segment
C
82
A
G
93
A
A
109
G
T
115
C
T
131
A
C
148
T
T
151
C
T
154
A
T
157
C
T
160
C
G
175
T
G
190
T
C
193
T
C
199
T
C
205
T
G
217
A
T
218
C
T
229
C
Show more
M segment
G
1
A
C
2
A
C
3
T
A
5
T
G
6
C
C
7
A
G
8
A
C
9
A
C
10
G
G
11
A
C
15
A
C
17
T
C
18
T
C
21
G
G
24
A
G
29
A
C
30
G
G
31
T
Show more
S segment
T
16
A
C
31
G
A
45
G
C
48
T
A
62
C
A
65
G
A
69
G
A
83
G
A
84
G
A
98
T
A
102
G
G
106
A
A
108
C
A
114
T
G
120
A
T
128
A
C
138
T
T
141
C
Show more
Deletions
M segment
5200-5202, 5240, 5241, 5273-5288
Insertions
M segment
ins_0:GGGAAAAGAAGGAAGAAG, ins_75:GT, ins_5336:GCCTGTT, ins_5372:ACTGCGTGCC, ins_5401:CTAGGGCGGTATCC
S segment
ins_0:CACGT
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
OR047158.1
&
OL774851.1
references
Substitutions
GPC
GPC:
F
5
Y
GPC:
E
6
K
GPC:
H
7
P
GPC:
L
10
W
GPC:
I
11
V
GPC:
N
12
Y
GPC:
V
14
A
GPC:
F
15
L
GPC:
I
18
L
GPC:
G
22
D
GPC:
G
23
V
GPC:
L
25
T
GPC:
A
26
T
GPC:
D
27
N
GPC:
E
28
G
GPC:
A
29
I
GPC:
R
30
S
GPC:
T
31
A
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NP
NP:
N
8
T
NP:
N
9
S
NP:
K
15
R
NP:
Y
20
F
NP:
G
23
S
NP:
F
30
Y
NP:
K
45
R
NP:
D
116
G
NP:
Q
179
L
NP:
D
199
E
NP:
S
275
N
NP:
I
277
V
NP:
A
307
P
NP:
Y
311
F
NP:
T
320
S
NP:
Q
370
E
NP:
R
428
K
RdRp
RdRp:
D
2
E
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
S
67
E
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
E
87
D
RdRp:
I
114
V
RdRp:
I
131
L
RdRp:
I
157
M
RdRp:
T
163
A
RdRp:
R
166
K
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
201
G
RdRp:
A
202
S
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L segment
M segment
S segment
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