This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q257.1

Canada/LOC_000Q257.1/2013-08-19
C. Therrien, E. Fournier, A. Ludwig, J. Menard, H. Charest & C. Martineau

Laboratoire de sante publique du Quebec, Bacteriologie

Sample details

Collection date
2013-08-19
Earliest release date
2019-08-31
Sampling location
Canada
Isolate name
VN1316CPR1/Canada/2013

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2019-08-31
NCBI update date
2019-08-31
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
MH819460.1
Submitting group
Date submitted
2026-11-05 10:26:43 UTC
Date released
2026-11-05 10:40:08 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
78
Total ambiguous nucs
1
Length
10374 (94.1%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:T284A
  • NS2A:H119Y
  • NS2A:R188K
  • NS2B:A103V
  • NS3:K112R
  • NS3:T249P
  • NS3:Y355H
  • NS3:I356T
  • NS4A:V85A
  • NS4B:I240M
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • C340T
  • C435T
  • A630G
  • T642C
  • G1113A
  • C1272T
  • T1442C
  • C1465T
  • G1662A
  • C1750T
  • T1983A
  • C2109T
  • C2304T
  • C2466T
  • T3138C
  • A3319G
  • C3501T
  • T3528C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:T284A

NS2A

  • NS2A:H119Y
  • NS2A:R188K

NS3

  • NS3:K112R
  • NS3:Y355H

NS4B

  • NS4B:I240M

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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