This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q22D.1

Russia/LOC_000Q22D.1/2013
A. Volynkina, A. Burlachenko, Y. Lisitskaya & E. Kotenev

Stavropol State Research Anti-Plague Institute, Laboratory of Natural-Focal Infections

Sample details

Collection date
2013
Earliest release date
2016-06-01
Sampling location
Russia
Isolate name
73-STV/HU-2013

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2016-06-01
INSDC accession L segment
INSDC accession M segment
INSDC accession S segment

Host

Host

Submission details

Submission ID
KR821822.1.L/KR821434.1.M/KR815085.1.S
Submitting group
Date submitted
2026-09-16 16:14:07 UTC
Date released
2026-09-16 16:16:01 UTC

Clade & Lineage

Closest reference L segment
singleReference (variant)
Closest reference M segment
M (MH396653.1) (variant)
Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs L segment
29
Length L segment
437 (3.61%)
Total SNPs M segment
52
Length M segment
435 (7.97%)
Total SNPs S segment
17
Length S segment
538 (29.8%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

L segment

  • T139C
  • T160C
  • T163C
  • G175A
  • C196T
  • T202C
  • A204G
  • T229C
  • T254A
  • A268G
  • G286A
  • C295T
  • C313A
  • T319A
  • C331T
  • C332T
  • T340C
  • C343T

M segment

  • G4657T
  • T4667C
  • A4685G
  • T4693C
  • C4697A
  • G4714A
  • C4720T
  • A4723G
  • G4732A
  • T4750C
  • T4765C
  • A4779G
  • T4780C
  • G4789A
  • A4795G
  • T4819C
  • T4825C
  • G4840A

S segment

  • C144T
  • C150T
  • C171T
  • C198T
  • G282A
  • A309G
  • G330A
  • T387C
  • A393G
  • A423G
  • A441G
  • G444A
  • A468G
  • G477A
  • C562A
  • A570G
  • A576G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

GPC

  • GPC:Y1527H
  • GPC:K1533E
  • GPC:Q1537K
  • GPC:N1564S
  • GPC:G1589R
  • GPC:I1599V
  • GPC:T1601L
  • GPC:T1604A
  • GPC:K1648R
  • GPC:R1661K

RdRp

  • RdRp:H43R
  • RdRp:Y60N
  • RdRp:I157M
  • RdRp:L158P
Deletions
N/A
Insertions
N/A

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