This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q22D.1

Central_African_Republic/LOC_000Q22D.1
J. Chamberlain & R. Hewson

Centre for Emergency Preparedness and Response, Novel and Dangerous Pathogens

Sample details

Earliest release date
2006-12-23
Sampling location
Central African Republic
Isolate name
BT958

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2006-12-23
INSDC accession S

Submission details

Submission ID
EF123122.1.S
Submitting group
Date submitted
2026-09-07 16:14:49 UTC
Date released
2026-09-07 16:15:29 UTC

Lineage

Segment S Lineage
IV.1

Files

Annotations

Alignment and QC

Total SNPs S
246
Total inserted nucs S
1
Length S
1673 (100%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • G54A
  • G67A
  • C82T
  • A118G
  • G123A
  • A124G
  • A130G
  • G136A
  • C142T
  • C154T
  • T155C
  • C166T
  • G169A
  • T175C
  • C178A
  • T182C
  • G189A
  • G190A
Deletions
N/A
Insertions

S

ins_1580:C

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:G23E
  • NP:Y34H
  • NP:R45K
  • NP:S65A
  • NP:D116E
  • NP:T124S
  • NP:G125N
  • NP:A147T
  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:T241A
  • NP:I246V
  • NP:R270K
  • NP:A271S
  • NP:K292R
  • NP:S301G
  • NP:Q405L
Deletions
N/A
Insertions
N/A

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