This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q22D.1

USA/LOC_000Q22D.1
L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Earliest release date
2022-07-30
Sampling location
USA (MD)
Isolate name
IbAr10200

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-11 10:16insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2022-07-30
INSDC accession L segment
BioProject accession
BioSample accession
Raw reads accession

Submission details

Submission ID
OK573218.1.L
Submitting group
Date submitted
2026-05-11 10:16:46 UTC
Date released
2026-05-11 10:23:28 UTC

Clade & Lineage

Closest reference L segment
singleReference (variant)

Files

Annotations

Alignment and QC

Total SNPs L segment
82
Total inserted nucs L segment
252
Total deleted nucs L segment
16
Total frame shifts L segment
1
Frame shifts L segment
RdRp:21-3946(nt:137-11914)
Length L segment
12338 (100%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 reference

Substitutions

L segment

  • A9T
  • A11C
  • T12C
  • A15T
  • T16C
  • C17A
  • C20A
  • C21G
  • C22G
  • G23C
  • T25G
  • A26C
  • C28G
  • G32A
  • T33A
  • A35C
  • A36T
  • C39A
Deletions

L segment

75-83, 130-136
Insertions

L segment

ins_151:AGGAAAGACCACTACTAGAGCTCTCTCTGTGTTAACGTGGGTAACGGGGGG, ins_12108:TTCTTTTCAACCATATGTCTACATTAGAGGAAGTTGTGAAGCAAGATAAGCCTCAGCTCTTAGTTAGATTTTGACTAAAGTGCTTCACTGGACAGATCTTACTGAGAACAACATTTTTCTCTGTTGATGTCAATGGAAAAATGCTAGGCATATTTGCCAACTCTCAAACTCTGTTAAATGTTACATATGTGTTCAAAATGG

Amino acid substitutions

Substitutions called relative to the NC_005301.3 reference

Substitutions

RdRp

  • RdRp:M1S
  • RdRp:D2Q
  • RdRp:F3E
  • RdRp:L4V
Deletions

RdRp

RdRp:19, RdRp:20
Insertions

RdRp

ins_RdRp:0:XLTSNHLSPVKA

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