This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PZR5.1

Display Name: France/LOC_000PZR5.1/2013-06-07
M. Bisseux, A. Mirand, C. Henquell & J.-L. Bailly

Sample details

Collection date
2013-06-07
Collection date (lower bound)
2013-06-07
Collection date (upper bound)
2013-06-07
Earliest release date
2025-01-01
Collection country
France
Isolate name
EV-A71_313162007_FRA13

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-28 16:27insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Centre National de Reference Enterovirus et Parechovirus - CHU Clermont ferrand, virologie

INSDC

NCBI release date
2025-01-01
INSDC accession EV-A71

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics EV-A71

Length EV-A71
7403
Total SNPs EV-A71
1498
Total inserted nucs EV-A71
5
Total deleted nucs EV-A71
2
Total ambiguous nucs EV-A71
0
Total unknown nucs EV-A71
0
Total frame shifts EV-A71
0
Completeness EV-A71
99.89%

Submission details

Submission ID
OQ091622.1.EV-A71
Submitting group
Date submitted
2025-10-28 16:26:42 UTC
Date released
2025-10-28 17:21:21 UTC

Clade

Clade EV-A71
C2

Genotype

Genotype
EV-A71

Files

Annotations

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • T11C
  • G12T
  • T13G
  • G14T
  • T17G
  • G19T
  • T20G
  • C21T
  • T36C
  • C38T
  • T51C
  • A54T
  • T59C
  • T61C
  • C62T
  • T63A
  • C64A
  • A76G
    • Deletions
    105, 106
    Insertions
    ins_86:TTT, ins_739:TC

    Amino acid mutations

    Mutations called relative to the U22521.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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