This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PZLF.1

South_Africa/LOC_000PZLF.1
F. J. Burt & R. Swanepoel

National Institute for Communicable Diseases, Special Pathogens Unit

Sample details

Earliest release date
2005-06-01
Sampling location
South Africa
Isolate name
spu40/00

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2005-06-01
INSDC accession S segment

Submission details

Submission ID
AY905644.1.S
Submitting group
Date submitted
2026-09-19 07:58:19 UTC
Date released
2026-09-19 08:00:04 UTC

Clade & Lineage

Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
28
Length S segment
450 (24.9%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • A173G
  • G174A
  • A193G
  • C201T
  • C228T
  • G231A
  • T258C
  • T273C
  • G282A
  • A309G
  • G330A
  • G339A
  • T354C
  • T369C
  • G375A
  • T384C
  • T387C
  • A393G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:K45R
  • NP:S52G
Deletions
N/A
Insertions
N/A

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