This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PZLF.1

Pakistan/LOC_000PZLF.1
F. J. Burt & R. Swanepoel

National Institute for Communicable Diseases, Special Pathogens Unit

Sample details

Earliest release date
2005-06-01
Sampling location
Pakistan
Isolate name
spu246/02/09

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2005-06-01
INSDC accession S segment

Submission details

Submission ID
AY905660.1.S
Submitting group
Date submitted
2026-09-04 15:29:37 UTC
Date released
2026-09-04 15:31:04 UTC

Clade & Lineage

Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
57
Length S segment
450 (24.9%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • A173G
  • G174A
  • G180A
  • A186G
  • C192T
  • C201T
  • G231A
  • A252C
  • T273C
  • G276A
  • G282C
  • T287C
  • G306T
  • A309G
  • T318G
  • A321G
  • G330A
  • G339A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:K45R
  • NP:V83A
  • NP:D116E
  • NP:A124S
  • NP:Q179L
  • NP:R183K
Deletions
N/A
Insertions
N/A

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