This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PZLF.1

India/LOC_000PZLF.1/2019
P. Yadav, A. Shete-Aich, D. Nyayanit & R. Sahay

National Institute of Virology, Maximum Containment Laboratory

Sample details

Collection date
2019
Earliest release date
2021-08-07
Sampling location
India (Gujarat State, Bhavnagar)
Isolate name
MCL-19-H-3173

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-09 06:41insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2021-08-07
INSDC accession M segment

Host

Host

Submission details

Submission ID
MW298543.1.M
Submitting group
Date submitted
2026-05-09 06:41:32 UTC
Date released
2026-05-09 06:48:19 UTC

Clade & Lineage

Closest reference M segment
M (OR047158.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs M segment
1226
Total inserted nucs M segment
15
Total deleted nucs M segment
10
Length M segment
5345 (98.9%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OR047158.1 references

Substitutions

M segment

  • G29A
  • C30G
  • G31T
  • G32A
  • G36A
  • G37A
  • A39T
  • A40G
  • A41T
  • G43A
  • T44A
  • G45C
  • G46T
  • C47T
  • G48T
  • T49G
  • C51G
  • G52C
Deletions

M segment

5211-5214, 5244, 5296-5298, 5341, 5342
Insertions

M segment

ins_5260:ACAATCGCTACACTT

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OR047158.1 references

Substitutions

GPC

  • GPC:M1N
  • GPC:L2M
  • GPC:F3L
  • GPC:H4P
  • GPC:F5L
  • GPC:E6K
  • GPC:H7S
  • GPC:I11T
  • GPC:V14I
  • GPC:F15L
  • GPC:I18L
  • GPC:L19F
  • GPC:G23S
  • GPC:L25V
  • GPC:A26T
  • GPC:D27S
  • GPC:E28G
  • GPC:A29G
Deletions
N/A
Insertions
N/A

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