This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PZLF.1

USA/LOC_000PZLF.1/2014-11-17
N. Grubaugh, S. Grewal, N. L. Matteson, K. Gangavarapu, N. Gurfield & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2014-11-17
Earliest release date
2019-01-20
Sampling location
USA (San_Diego,California)
Isolate name
WNV/bird/San_Diego_CA_USA/2014-11-17/W545

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-22 14:38insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2019-01-20
NCBI update date
2019-01-20
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
MH507964.1
Submitting group
Date submitted
2026-05-22 14:37:53 UTC
Date released
2026-05-22 14:53:57 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
90
Length
10302 (93.4%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:M29I
  • NS1:L169M
  • NS2A:I129V
  • NS2B:A103F
  • NS3:R185K
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS5:K177R
  • capsid:I111S
  • env:K93R
  • env:T126I
  • env:I159A
  • env:V431I
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T428G
  • C450T
  • A630G
  • C660T
  • T699C
  • C933T
  • T1032C
  • C1134T
  • T1442C
  • C1465T
  • A1683G
  • T1908C
  • A2208G
  • G2257A
  • G2556A
  • T2637C
  • T2727C
  • C2760T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:M29I
  • NS1:L169M

NS2A

  • NS2A:I129V

NS2B

  • NS2B:V103F

NS3

  • NS3:R185K

capsid

  • capsid:I111S

env

  • env:V159A
  • env:L167F
  • env:V431I
Deletions
N/A
Insertions
N/A

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