This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PZLF.1

Pakistan/LOC_000PZLF.1/2011
M. Umair

National Institute of Health, Department of Virology

Sample details

Collection date
2011
Earliest release date
2020-08-26
Sampling location
Pakistan
Isolate name
CCHF-2011-95-NIH-PAK

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2020-08-26
INSDC accession S

Host

Host

Submission details

Submission ID
MN970092.1.S
Submitting group
Date submitted
2026-07-07 12:47:52 UTC
Date released
2026-07-07 12:51:35 UTC

Lineage

Segment S Lineage
IV.1

Files

Annotations

Alignment and QC

Total SNPs S
35
Length S
260 (15.6%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • G292A
  • C295T
  • A322T
  • A325G
  • T334G
  • A337G
  • G346A
  • G367A
  • C370A
  • A394G
  • G397A
  • C400T
  • C403G
  • C406T
  • G409C
  • G418A
  • A425T
  • G428A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:D116E
  • NP:T124S
  • NP:G125N
Deletions
N/A
Insertions
N/A

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