LOC_000PZLF.1

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India/LOC_000PZLF.1/2019

R. R. Sahay, S. Dhandore, P. D. Yadav, A. Chauhan, L. Bhatt, V. Garg, N. Gupta, D. A. Nyayanit, A. M. Shete, R. Singh, S. Patil, H. Sharma, D. Meena, J. Gupta, P. Gawande, K. Kalele, R. Jain, D. Mali, B. Malhotra, V. Nag, P. K. Khatri, H. Kaur, N. Vijay, S. Singh, M. Gopalakrishnan & P. Yadav

National Institue of Virology, Maximum Containment Laboratory

Sample details

Collection date

2019

Earliest release date

2020-06-27

Sampling location

India (Gujarat State)

Isolate name

MCL-19-H-1849

Data use terms

OPEN

Data use terms URL

https://#TODO-MVP/open

INSDC

NCBI release date

2020-06-27

INSDC accession L

MN866163.1

INSDC accession M

MN866162.1

INSDC accession S

MN866164.1

Host

human (Homo sapiens)

Submission details

Submission ID

MN866163.1.L/MN866162.1.M/MN866164.1.S

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-10-22 18:26:34 UTC

Date released

2026-10-22 18:30:29 UTC

Lineage

Segment S Lineage

IV.1

Files

Annotations

LOC_000PZLF.1.embl

Alignment and QC

Total SNPs L

1658

Total inserted nucs L

Total deleted nucs L

Length L

12108 (99.8%)

Total SNPs S

214

Total inserted nucs S

Length S

1634 (97.7%)

Total SNPs M

672

Length M

5338 (99.5%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

G32A
A35G
G43T
T49C
C63G
C64T
T65C
T66C
T68C
G69A
G71T
C85T
G88A
G93A
A109G
C117A
A124G
T131A

M

A42C
A57G
A69G
C82T
C85T
T86C
A107G
A117G
C119T
C120T
C126T
A128G
G131A
T137C
G143A
A146G
G147A
C153A

S

A50G
G54A
G67A
T79C
A81G
G99A
A109G
A118G
C166T
G169A
T172C
C178A
T182C
G190A
G196A
T199C
C208T
C217T

Deletions

L

12029, 12081, 12082

Insertions

L

ins_58:T, ins_11931:AT, ins_12051:TAGTCCAATTCTTTCAAC, ins_12108:TTGAT

S

ins_1584:C

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references