This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
CCHF (Multi-Ref)
SeqSets
Login
Loculus
Organisms
CCHF (Multi-Ref)
Crimean-Congo Hemorrhagic Fever Virus
Ebola Sudan
Enterovirus
Test Dummy Organism
Test organism (with files)
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
CCHF (Multi-Ref)
|
Browse data
Submit sequences
Select organism section
Browse data
Submit sequences
LOC_000PZLF.1
Download
Download FASTA
Download metadata TSV
Russia/LOC_000PZLF.1/2012
A. Volynkina,
A. Burlachenko,
Y. Lisitskaya &
E. Kotenev
Stavropol State Research Anti-Plague Institute, Laboratory of Natural-Focal Infections
Sample details
Collection date
2012
Earliest release date
2016-06-01
Sampling location
Russia
Isolate name
76-ROS/TI-2012
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2016-06-01
INSDC accession L segment
KR821750.1
INSDC accession M segment
KR821354.1
Host
Host
ticks (Ixodoidea)
Submission details
Submission ID
KR821750.1.L/KR821354.1.M
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-09-11 12:57:02 UTC
Date released
2026-09-11 12:59:31 UTC
Clade & Lineage
Closest reference L segment
singleReference (variant)
Closest reference M segment
M (MH396653.1) (variant)
Files
Annotations
LOC_000PZLF.1.embl
Alignment and QC
Total SNPs M segment
75
Total inserted nucs M segment
3
Length M segment
438 (7.97%)
Total SNPs L segment
43
Length L segment
437 (3.61%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
&
MH396653.1
references
Substitutions
L segment
T
131
A
C
148
T
T
151
C
T
154
C
T
160
C
T
163
C
T
202
C
T
218
C
T
229
C
A
240
C
T
241
C
T
253
C
T
254
A
G
264
A
C
265
T
A
268
G
C
276
T
C
284
A
Show more
M segment
C
4640
T
T
4645
C
C
4648
T
G
4657
A
A
4660
G
A
4663
G
T
4672
C
A
4685
G
A
4690
T
C
4697
A
A
4709
G
G
4714
A
C
4720
T
A
4723
G
A
4726
G
T
4738
A
T
4739
C
G
4741
A
Show more
Deletions
N/A
Insertions
M segment
ins_5062:GGG
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
&
MH396653.1
references
Substitutions
GPC
GPC:
K
1533
E
GPC:
E
1534
D
GPC:
Q
1537
K
GPC:
N
1541
D
GPC:
N
1564
D
GPC:
G
1590
S
GPC:
I
1591
V
GPC:
N
1594
S
GPC:
V
1595
F
GPC:
I
1597
V
GPC:
F
1600
L
GPC:
T
1601
L
GPC:
T
1604
A
GPC:
I
1607
V
GPC:
I
1610
V
GPC:
R
1618
K
GPC:
K
1648
R
GPC:
N
1655
S
Show more
RdRp
RdRp:
S
19
T
RdRp:
D
55
A
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L segment
M segment
Report an issue with this sequence or metadata
Create GitHub issue