This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PZLF.1

Pakistan/LOC_000PZLF.1/2015-01
M. Majumdar, S. Sharif, D. Klapsa, T. Wilton, M. M. Alam, M. D. Fernandez-Garcia, L. Rehman, G. Mujtaba, G. McAllister, H. Harvala, K. Templeton, E. T. Mee, H. Asghar, K. Ndiaye, P. D. Minor & J. Martin

National Institute for Biological Standards and Control, Virology

Sample details

Collection date
2015-01
Earliest release date
2018-11-21
Sampling location
Pakistan
Isolate name
Env_PAK_Jan15-EV-A71b

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2018-11-21
NCBI update date
2018-11-21
INSDC accession

Submission details

Submission ID
MH084343.1
Submitting group
Date submitted
2026-07-17 10:32:30 UTC
Date released
2026-07-17 10:39:51 UTC

Clade

Clade EV-A71
C

Genotype

Genotype
EV-A71

Alignment and QC

Total SNPs
120
Length
640 (8.64%)

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions
  • T2609C
  • T2615C
  • G2621A
  • T2636A
  • G2639A
  • T2645C
  • T2648C
  • T2657C
  • C2660T
  • T2666A
  • A2669G
  • C2675T
  • C2676T
  • T2678G
  • T2684C
  • A2699T
  • C2702A
  • T2703C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the U22521.1 reference

Substitutions

VP1

  • VP1:K98E
  • VP1:R145E
  • VP1:P172Q
  • VP1:S183L
  • VP1:E244K
  • VP1:S246P
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue