This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PW1P.1

Display Name: China/LOC_000PW1P.1/1970
A. Moming, Q. Zhu, Y. Bai, J. Jin, Q. Wu, Z. Su, S. Tang, Y. Zhang, S. Shen & F. Deng

Sample details

Collection date
1970
Collection date (lower bound)
1970-01-01
Collection date (upper bound)
1970-12-31
Earliest release date
2023-08-21
Collection country
China
Isolate name
A7001

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-10 19:02insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Wuhan Institute of Virology, Chinese Academy of Sciences

INSDC

NCBI release date
2023-08-21
INSDC accession L
INSDC accession M
INSDC accession S

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics L

Length L
12197
Total SNPs L
1662
Total inserted nucs L
96
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
99.94%

Alignment and QC metrics M

Length M
5323
Total SNPs M
1049
Total inserted nucs M
1
Total deleted nucs M
0
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
99.18%

Alignment and QC metrics S

Length S
1828
Total SNPs S
230
Total inserted nucs S
190
Total deleted nucs S
8
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
98.44%

Submission details

Submission ID
OR047181.1.L/OR047161.1.M/OR047141.1.S
Submitting group
Date submitted
2025-11-10 19:02:11 UTC
Date released
2025-11-10 19:07:19 UTC

Lineage

Segment S Lineage
IV.2

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:G8A
  • L:A9T
  • L:T10C
  • L:A11T
  • L:G23T
  • L:A35G
  • L:G43C
  • L:T49C
  • L:G56A
  • L:T58C
  • L:C59T
  • L:T62C
  • L:C64T
  • L:T65G
  • L:T67C
  • L:G71T
  • L:A72T
  • L:A73G

    • M

  • M:G50T
  • M:A51G
  • M:G56A
  • M:A57C
  • M:A70G
  • M:T71A
  • M:A80G
  • M:C81T
  • M:G84T
  • M:C85T
  • M:T86C
  • M:A88G
  • M:A90G
  • M:C92T
  • M:C96T
  • M:T98C
  • M:T100C
  • M:T102C

    • S

  • S:T3C
  • S:A5C
  • S:A6C
  • S:A7T
  • S:G8A
  • S:A11G
  • S:A13C
  • S:C14A
  • S:G15C
  • S:G20A
  • S:T22C
  • S:A24T
  • S:G26T
  • S:T39C
  • S:T41A
  • S:T42G
  • S:T46A
  • S:G47C
    • Deletions
    S:28-35
    Insertions
    ins_L:67:CC, ins_L:11928:TG, ins_L:12065:CAATTATTAGTTTGCCTT, ins_L:12089:TCACTATTCAT, ins_L:12108:TTATTTCCAGGGTGTGGGGGGAACGGCGGCTGCTGGCACCAGACTTGCCCTCCAATGGATCCT, ins_M:5171:C, ins_S:0:CACAAAGCCAAGTGCAAACGGCTTTTCATCGTTTGCTGACATCTGTTTGCTGAGCAGTTAGGAGGCTGGCCTTGAGGATCATAACATCAGCATGTAGAGTGGGCTGTCTGCCATGACAGTCTGCTAGTAACAGCTAGAGTAGCCT, ins_S:54:CTGGTTACATGGATGATGTCAAGCCGGAATCAGTGAAAGGCAAA, ins_S:1577:A

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:H2Y
  • GPC:I3T
  • GPC:S4P
  • GPC:M6L
  • GPC:Y7C
  • GPC:I9V
  • GPC:C15W
  • GPC:G16S
  • GPC:G18E
  • GPC:E19G
  • GPC:T20S
  • GPC:S23L
  • GPC:H24S
  • GPC:E26K
  • GPC:R28Q
  • GPC:N30S
  • GPC:K31N
  • GPC:D33S

    • NP

  • NP:R15K
  • NP:K91R
  • NP:D116E
  • NP:T124A
  • NP:G125D
  • NP:A146T
  • NP:N150H
  • NP:N188S
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:D262N
  • NP:R270K
  • NP:S301G
  • NP:M353L
  • NP:V436I

    • RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:N24S
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:I114V
  • RdRp:I157M
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:D191N
  • RdRp:S205P
  • RdRp:N206Q
  • RdRp:K275R
  • RdRp:I279V
    • Deletions
    None
    Insertions
    None

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