This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PVYV.1

Display Name: China/LOC_000PVYV.1/2004
A. Moming, Q. Zhu, Y. Bai, J. Jin, Q. Wu, Z. Su, S. Tang, Y. Zhang, S. Shen & F. Deng

Sample details

Collection date
2004
Collection date (lower bound)
2004-01-01
Collection date (upper bound)
2004-12-31
Earliest release date
2023-08-21
Collection country
China
Isolate name
BA04032

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-10 19:02insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Wuhan Institute of Virology, Chinese Academy of Sciences

INSDC

NCBI release date
2023-08-21
INSDC accession L
INSDC accession M
INSDC accession S

Host

Host taxon id
Host name scientific
Ixodoidea

Alignment and QC metrics L

Length L
12232
Total SNPs L
1538
Total inserted nucs L
124
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
100.00%

Alignment and QC metrics S

Length S
1673
Total SNPs S
208
Total inserted nucs S
1
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
100.00%

Alignment and QC metrics M

Length M
5401
Total SNPs M
1591
Total inserted nucs M
92
Total deleted nucs M
31
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
1
Frame shifts M
GPC:20-38(nt:150-206)
Completeness M
99.52%

Submission details

Submission ID
OR047178.1.L/OR047158.1.M/OR047138.1.S
Submitting group
Date submitted
2025-11-10 19:02:11 UTC
Date released
2025-11-10 19:07:19 UTC

Lineage

Segment S Lineage
IV.2

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:T10C
  • L:G23T
  • L:A35G
  • L:G43C
  • L:T49C
  • L:A50G
  • L:C63G
  • L:C64T
  • L:T65C
  • L:T66C
  • L:G69A
  • L:G71T
  • L:G88A
  • L:G93A
  • L:A109G
  • L:T131A
  • L:T139C
  • L:T151C

    • M

  • M:T1C
  • M:T3A
  • M:C4G
  • M:A5C
  • M:A6G
  • M:A7C
  • M:G8C
  • M:A9G
  • M:A13C
  • M:T15C
  • M:T16C
  • M:G19C
  • M:A22G
  • M:A27G
  • M:G28C
  • M:T29G
  • M:A30G
  • M:A34G

    • S

  • S:C38A
  • S:T48C
  • S:G51A
  • S:G54A
  • S:A61G
  • S:C97T
  • S:G99A
  • S:A118G
  • S:C142T
  • S:T157C
  • S:C166T
  • S:C178A
  • S:T182C
  • S:C187T
  • S:G190A
  • S:G196A
  • S:C217T
  • S:G229A
    • Deletions
    M:38-40, M:207-216, M:671-685, M:5153-5155
    Insertions
    ins_L:58:T, ins_L:11922:TC, ins_L:12108:TTTCATTTTCACTATTTCCAGTTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATG, ins_M:0:GC, ins_M:149:CTTGCTGATGAGGCCAGAACGA, ins_M:362:CCAACCATCACCGTCCAGCCACCGGCAACAGAGAAA, ins_M:5232:TAACTAACTTAAGGAACCATGACCGGCCAGCT, ins_S:1577:A

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:M1E
  • GPC:I3M
  • GPC:S4L
  • GPC:M6I
  • GPC:Y7N
  • GPC:A8F
  • GPC:I9V
  • GPC:L10F
  • GPC:L12Q
  • GPC:Q13I
  • GPC:C15W
  • GPC:G16S
  • GPC:L17G
  • GPC:S43V
  • GPC:P46T
  • GPC:V48T
  • GPC:S49E
  • GPC:T50A

    • NP

  • NP:R15K
  • NP:D116E
  • NP:T124A
  • NP:G125D
  • NP:A146T
  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:D262N
  • NP:R270K
  • NP:S301G
  • NP:M353L
  • NP:V436I

    • RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67L
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:I114V
  • RdRp:E126D
  • RdRp:T163A
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K218R
  • RdRp:I223M
  • RdRp:K275R
    • Deletions
    GPC:39-42, GPC:128-137, GPC:193-197
    Insertions
    ins_GPC:18:GLAD, ins_GPC:106:KSSTTTSPTATTPAVPTPGPPA

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