This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
SeqSets
Login
Loculus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
Test Dummy Organism
Test organism (with files)
Ebola Sudan
Enterovirus
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
Crimean-Congo Hemorrhagic Fever Virus
|
Browse data
Submit sequences
LOC_000PVXX.1
Download
Download FASTA
Download metadata TSV
Display Name: China/LOC_000PVXX.1/1977
A. Moming,
Q. Zhu,
Y. Bai,
J. Jin,
Q. Wu,
Z. Su,
S. Tang,
Y. Zhang,
S. Shen &
F. Deng
Sample details
Collection date
1977
Collection date (lower bound)
1977-01-01
Collection date (upper bound)
1977-12-31
Earliest release date
2023-08-21
Collection country
China
Isolate name
BA7708
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-11-10 19:02
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Wuhan Institute of Virology, Chinese Academy of Sciences
INSDC
NCBI release date
2023-08-21
INSDC accession L
OR047177.1
INSDC accession M
OR047157.1
INSDC accession S
OR047137.1
Alignment and QC metrics L
Length L
12318
Total SNPs L
1629
Total inserted nucs L
227
Total deleted nucs L
17
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
100.00%
Alignment and QC metrics M
Length M
5530
Total SNPs M
597
Total inserted nucs M
175
Total deleted nucs M
11
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
100.00%
Alignment and QC metrics S
Length S
1632
Total SNPs S
199
Total inserted nucs S
83
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
92.64%
Submission details
Submission ID
OR047177.1.L/OR047157.1.M/OR047137.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-11-10 19:02:11 UTC
Date released
2025-11-10 19:07:19 UTC
Lineage
Segment S Lineage
IV.2
Files
Annotations
LOC_000PVXX.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
C
2
T
L:
C
4
G
L:
A
6
C
L:
A
9
T
L:
T
10
A
L:
A
11
G
L:
C
13
G
L:
T
16
C
L:
C
17
A
L:
C
39
A
L:
G
41
A
L:
G
45
A
L:
C
46
G
L:
T
49
C
L:
A
50
T
L:
G
51
A
L:
T
55
G
L:
G
56
C
Show more
M
M:
C
4
T
M:
A
7
G
M:
A
9
T
M:
A
11
T
M:
T
68
C
M:
G
76
A
M:
A
80
G
M:
C
85
T
M:
A
88
G
M:
C
92
T
M:
A
107
G
M:
A
112
G
M:
A
117
G
M:
C
119
T
M:
C
126
T
M:
A
128
G
M:
G
136
A
M:
A
146
G
Show more
S
S:
T
1
C
S:
C
2
T
S:
T
3
G
S:
C
4
G
S:
A
6
G
S:
A
7
C
S:
G
8
T
S:
A
10
T
S:
A
11
T
S:
A
13
C
S:
C
14
T
S:
T
48
C
S:
G
54
A
S:
A
61
G
S:
C
64
T
S:
G
67
A
S:
G
91
A
S:
G
99
A
Show more
Deletions
L:18-34, M:5289-5299
Insertions
ins_L:0:GCTGTA, ins_L:58:AATATGCATAGGGAGAAGACAATATTGGCAAAAATAAA, ins_L:11925:GT, ins_L:12054:TACAGTTCT, ins_L:12083:GCTATTT, ins_L:12108:TTCATTATTTCCAGGGTGTGGGGGGAACGATTTCTATCCCCATCCCCCGCCAGCGTCTGGGCCTCGTCCCCTTCTCTCTGTCTCCCTCTCGTCCCCCATCTCGTCCCCCGACACTGACACCCCGATACTCCTGAACTCTCTTCAGTCCCAGCCTTGCTCTCCAAT, ins_M:0:AAAGAATTGAAAGGCAAAGATTTCCATATAT, ins_M:16:ATTCCTCCGGGTTCAAATAATGATTTGCTGAGA...
Show more
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
Y
7
C
GPC:
I
9
V
GPC:
C
15
Y
GPC:
G
22
R
GPC:
H
24
S
GPC:
R
28
E
GPC:
D
33
N
GPC:
T
34
V
GPC:
M
35
V
GPC:
N
41
S
GPC:
P
42
Q
GPC:
S
44
P
GPC:
P
47
L
GPC:
A
51
T
GPC:
S
53
P
GPC:
I
54
V
GPC:
P
58
S
GPC:
L
70
P
Show more
NP
NP:
R
15
K
NP:
D
44
E
NP:
D
116
E
NP:
T
124
A
NP:
G
125
N
NP:
N
150
H
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
275
N
NP:
S
301
G
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
I
45
M
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
E
167
G
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
RdRp:
I
279
V
Show more
Deletions
None
Insertions
None
Load sequences
Report an issue with this sequence or metadata
Create GitHub issue