This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PVPD.1

Display Name: China/LOC_000PVPD.1/1975
A. Moming, Q. Zhu, Y. Bai, J. Jin, Q. Wu, Z. Su, S. Tang, Y. Zhang, S. Shen & F. Deng

Sample details

Collection date
1975
Collection date (lower bound)
1975-01-01
Collection date (upper bound)
1975-12-31
Earliest release date
2023-08-21
Collection country
China
Isolate name
Ha75001

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-10 19:02insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Wuhan Institute of Virology, Chinese Academy of Sciences

INSDC

NCBI release date
2023-08-21
INSDC accession L
INSDC accession M
INSDC accession S

Host

Host taxon id
Host name scientific
Ixodoidea

Alignment and QC metrics L

Length L
12168
Total SNPs L
1608
Total inserted nucs L
60
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
100.00%

Alignment and QC metrics M

Length M
5483
Total SNPs M
609
Total inserted nucs M
128
Total deleted nucs M
11
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
100.00%

Alignment and QC metrics S

Length S
1688
Total SNPs S
218
Total inserted nucs S
23
Total deleted nucs S
2
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
99.70%

Submission details

Submission ID
OR047169.1.L/OR047149.1.M/OR047129.1.S
Submitting group
Date submitted
2025-11-10 19:02:11 UTC
Date released
2025-11-10 19:07:19 UTC

Lineage

Segment S Lineage
IV.2

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:T10C
  • L:G23T
  • L:A35G
  • L:G43C
  • L:T49C
  • L:A50G
  • L:C63G
  • L:C64T
  • L:T65C
  • L:T66C
  • L:G69A
  • L:G71T
  • L:G88A
  • L:G93A
  • L:A109G
  • L:A124G
  • L:T131A
  • L:C136T

    • M

  • M:T1C
  • M:T3A
  • M:A5T
  • M:T68C
  • M:G76A
  • M:A80G
  • M:C85T
  • M:A88G
  • M:C92T
  • M:A107G
  • M:A112G
  • M:A117G
  • M:C119T
  • M:C126T
  • M:A128G
  • M:G136A
  • M:A146G
  • M:G149A

    • S

  • S:T1C
  • S:C2A
  • S:T48C
  • S:G54A
  • S:A61G
  • S:C64T
  • S:G67A
  • S:G91A
  • S:G99A
  • S:A118G
  • S:C139T
  • S:C142T
  • S:T157C
  • S:C166T
  • S:C178A
  • S:T182C
  • S:C187A
  • S:G229A
    • Deletions
    M:5289-5299, S:1611, S:1612
    Insertions
    ins_L:58:T, ins_L:11925:GT, ins_L:12054:TACAGTTCT, ins_L:12083:GCTATTT, ins_L:12108:TTCATTATTTCCAGGGTGTGGGGGGAACGATTTCTTCTGAA, ins_M:0:CTCATCTTGACTGCGTGCCG, ins_M:5168:G, ins_M:5366:CTAGGTATTGAACCAGTTTCTGCATTGCTGAATCAATCTCCCAAGGGTAATTCCACAGAAATCCCAGGGGCTTGGAGTAAACAAGACCGCGCCTAGCCCAGCTAGAG, ins_S:0:CCCATCAATGGCAATGGCAAA, ins_S:1530:T, ins_S:1577:A

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:Y7C
  • GPC:I9V
  • GPC:C15Y
  • GPC:H24S
  • GPC:R28E
  • GPC:D33N
  • GPC:T34V
  • GPC:M35V
  • GPC:N41S
  • GPC:P42Q
  • GPC:S44P
  • GPC:P47L
  • GPC:A51T
  • GPC:S53P
  • GPC:I54V
  • GPC:P58S
  • GPC:L70P
  • GPC:G85E

    • NP

  • NP:R15K
  • NP:D44E
  • NP:T111I
  • NP:D116E
  • NP:T124A
  • NP:G125N
  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:A229T
  • NP:I246V
  • NP:D262E
  • NP:R270K
  • NP:S275N
  • NP:Y291L
  • NP:S301G
  • NP:V436I

    • RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:I45M
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:L90I
  • RdRp:I114V
  • RdRp:T163A
  • RdRp:E167G
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K275R
    • Deletions
    None
    Insertions
    None

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