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LOC_000PVMH.1
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Download FASTA
Download metadata TSV
Display Name: China/LOC_000PVMH.1/2004
A. Moming,
Q. Zhu,
Y. Bai,
J. Jin,
Q. Wu,
Z. Su,
S. Tang,
Y. Zhang,
S. Shen &
F. Deng
Sample details
Collection date
2004
Collection date (lower bound)
2004-01-01
Collection date (upper bound)
2004-12-31
Earliest release date
2023-08-21
Collection country
China
Isolate name
YL04041
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-11-10 19:02
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Wuhan Institute of Virology, Chinese Academy of Sciences
INSDC
NCBI release date
2023-08-21
INSDC accession L
OR047167.1
INSDC accession M
OR047147.1
INSDC accession S
OR047127.1
Host
Host taxon id
297308
Host name scientific
Ixodoidea
Alignment and QC metrics L
Length L
12004
Total SNPs L
1476
Total inserted nucs L
60
Total deleted nucs L
2
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
98.66%
Alignment and QC metrics S
Length S
1673
Total SNPs S
208
Total inserted nucs S
1
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
100.00%
Alignment and QC metrics M
Length M
5599
Total SNPs M
1579
Total inserted nucs M
281
Total deleted nucs M
28
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
1
Frame shifts M
GPC:20-38(nt:150-206)
Completeness M
99.63%
Submission details
Submission ID
OR047167.1.L/OR047147.1.M/OR047127.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-11-10 19:02:11 UTC
Date released
2025-11-10 19:07:19 UTC
Lineage
Segment S Lineage
IV.2
Files
Annotations
LOC_000PVMH.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
C
2
A
L:
C
4
T
L:
A
6
T
L:
A
7
T
L:
G
8
A
L:
A
9
T
L:
T
12
A
L:
C
13
A
L:
A
15
G
L:
T
16
G
L:
C
18
G
L:
G
23
T
L:
G
32
A
L:
A
35
G
L:
A
42
G
L:
G
43
C
L:
T
49
C
L:
C
59
T
Show more
M
M:
T
1
C
M:
C
2
A
M:
T
3
G
M:
C
4
A
M:
A
6
G
M:
A
7
C
M:
G
8
A
M:
A
10
G
M:
T
12
A
M:
A
13
G
M:
T
15
A
M:
T
16
G
M:
G
50
T
M:
A
51
G
M:
A
52
T
M:
G
56
T
M:
T
58
G
M:
T
59
G
Show more
S
S:
C
38
A
S:
T
48
C
S:
G
51
A
S:
G
54
A
S:
A
61
G
S:
C
97
T
S:
G
99
A
S:
A
118
G
S:
C
142
T
S:
T
157
C
S:
C
166
T
S:
C
178
A
S:
T
182
C
S:
C
187
T
S:
G
190
A
S:
G
196
A
S:
C
217
T
S:
G
229
A
Show more
Deletions
L:67, L:68, M:207-216, M:671-685, M:5153-5155
Insertions
ins_L:0:TCTCCACATTTGGAGCAATACAGTCGAATCTTTAAATTTTTAACTGGTTTCTTTTTAC, ins_L:11922:TC, ins_M:0:GAGAGCACTGGGTAGAGGTGGGCACAGGTGTGGGTGCCCTCCCCAGCATCACTGTCCCATGGCGAGAGGTCAGAAAGGCAAACAAGCAATGGGGGTAGATGCTGAGCAGGGAGGGGCCCTGAAGCAGGACCTGGGGACAGCCAAGGACAACTATTTTGTGAGAGAGGAATGAAACCTTGCAGGTCCTGCCA, ins_M:149:CTTGCTGATGAGGCCAGAACGA, ins_M:362:CCAACCATCACCGTCCAGCCACCGGCAACAGAGAAA,...
Show more
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
M
1
E
GPC:
I
3
M
GPC:
S
4
L
GPC:
M
6
I
GPC:
Y
7
N
GPC:
A
8
F
GPC:
I
9
V
GPC:
L
10
F
GPC:
L
12
Q
GPC:
Q
13
I
GPC:
C
15
W
GPC:
G
16
S
GPC:
L
17
G
GPC:
S
43
V
GPC:
P
46
T
GPC:
V
48
I
GPC:
S
49
V
GPC:
T
50
A
Show more
NP
NP:
R
15
K
NP:
D
116
E
NP:
T
124
A
NP:
G
125
D
NP:
A
146
T
NP:
N
150
H
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
D
262
N
NP:
R
270
K
NP:
S
301
G
NP:
M
353
L
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
E
126
D
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
218
R
RdRp:
I
223
M
RdRp:
K
275
R
Show more
Deletions
GPC:39-42, GPC:128-137, GPC:193-197
Insertions
ins_GPC:18:GLAD, ins_GPC:106:KSSTTTSPTATTPAVPTPGPPA
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