This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PVLK.1

Display Name: Turkey/LOC_000PVLK.1/2019
A. T. Kalaycioglu, R. Durmaz, O. Ari, M. Bakir, A. Engin & T. Dal

Sample details

Collection date
2019
Collection date (lower bound)
2019-01-01
Collection date (upper bound)
2019-12-31
Earliest release date
2023-08-15
Collection country
Turkey
Isolate name
TR-SIVAS-C20M-2019

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-10 19:02insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Karadeniz Technical University, Faculty of Pharmacy Department of Pharmaceutical Microbiology

INSDC

NCBI release date
2023-08-15
INSDC accession L
INSDC accession M

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics L

Length L
468
Total SNPs L
50
Total inserted nucs L
0
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
3.87%

Alignment and QC metrics M

Length M
687
Total SNPs M
103
Total inserted nucs M
0
Total deleted nucs M
0
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
12.80%

Submission details

Submission ID
OQ954478.1.L/OQ935554.1.M
Submitting group
Date submitted
2025-11-10 19:02:11 UTC
Date released
2025-11-10 19:07:19 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:C6715T
  • L:A6724G
  • L:A6730G
  • L:G6733T
  • L:T6745C
  • L:G6748A
  • L:A6751G
  • L:C6757T
  • L:T6760A
  • L:C6766T
  • L:T6769C
  • L:A6784T
  • L:T6800C
  • L:G6805A
  • L:A6808T
  • L:A6811G
  • L:T6841C
  • L:A6850G

    • M

  • M:C1736T
  • M:G1739A
  • M:C1745T
  • M:C1754T
  • M:T1763C
  • M:C1766T
  • M:T1772C
  • M:C1781T
  • M:A1784G
  • M:A1805G
  • M:C1808T
  • M:C1811T
  • M:T1820C
  • M:A1823G
  • M:G1828A
  • M:G1845A
  • M:T1853C
  • M:G1865A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:R579K
  • GPC:E585K
  • GPC:N592T
  • GPC:V598T
  • GPC:Y606F
  • GPC:R609K
  • GPC:T633S
  • GPC:I637V
  • GPC:K669H
  • GPC:K675R
  • GPC:K688R
  • GPC:I711L
  • GPC:L714S
  • GPC:V718I
  • GPC:R724K
  • GPC:L725I
  • GPC:T742A

    • RdRp

  • RdRp:A2330T
    • Deletions
    None
    Insertions
    None

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