This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PVFW.1

Pakistan/LOC_000PVFW.1/2019
M. Umair, A. Khurshid, M. M. Alam, R. Akhtar, M. Salman & A. Ikram

National Institute of Health, Department of Virology

Sample details

Collection date
2019
Earliest release date
2020-08-26
Sampling location
Pakistan
Isolate name
CCHFV28-NIH-PAK-2019

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-20 16:23insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2020-08-26
INSDC accession S segment

Host

Host

Submission details

Submission ID
MN839491.1.S
Submitting group
Date submitted
2026-05-20 16:22:57 UTC
Date released
2026-05-20 16:26:41 UTC

Clade & Lineage

Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
33
Total inserted nucs S segment
1
Total frame shifts S segment
1
Frame shifts S segment
NP:82-483(nt:283-1488)
Length S segment
245 (13.5%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • G276A
  • G282A
  • G306T
  • A309G
  • T318G
  • A321G
  • G330A
  • G339A
  • C342A
  • G351A
  • T354A
  • A378G
  • T387G
  • C390T
  • A393C
  • A405G
  • G409T
  • T414C
Deletions
N/A
Insertions

S segment

ins_282:T

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions
N/A
Deletions
N/A
Insertions
N/A

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