This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PV5G.1

Display Name: Turkey/LOC_000PV5G.1/2021
A. T. Kalaycioglu, T. C. Oguzoglu, O. Ari, A. Engin, M. Bakir & R. Durmaz

Sample details

Collection date
2021
Collection date (lower bound)
2021-01-01
Collection date (upper bound)
2021-12-31
Earliest release date
2023-08-15
Collection country
Turkey
Isolate name
TR-SIVAS-C29M-2021

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-10 19:02insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Karadeniz Technical University, Faculty of Pharmacy Department of Pharmaceutical Microbiology

INSDC

NCBI release date
2023-08-15
INSDC accession M

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics M

Length M
860
Total SNPs M
127
Total inserted nucs M
0
Total deleted nucs M
0
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
16.03%

Submission details

Submission ID
OQ935545.1.M
Submitting group
Date submitted
2025-11-10 19:02:11 UTC
Date released
2025-11-10 19:07:19 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • M:A1658G
  • M:C1661A
  • M:A1662G
  • M:T1673C
  • M:A1688G
  • M:A1694G
  • M:G1703A
  • M:T1706A
  • M:C1718T
  • M:G1720A
  • M:C1721T
  • M:C1736T
  • M:G1739A
  • M:C1745T
  • M:C1754T
  • M:T1763C
  • M:C1766T
  • M:T1772C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:S524G
  • GPC:G543D
  • GPC:R579K
  • GPC:N592T
  • GPC:V598T
  • GPC:Y606F
  • GPC:R609K
  • GPC:T633S
  • GPC:I637V
  • GPC:K669H
  • GPC:K688R
  • GPC:L707F
  • GPC:I711L
  • GPC:L714S
  • GPC:V718I
  • GPC:R724K
  • GPC:L725I
  • GPC:T742A
  • GPC:I778T
  • GPC:V802I
    • Deletions
    None
    Insertions
    None

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