This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
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Loculus
Crimean-Congo Hemorrhagic Fever Virus
Crimean-Congo Hemorrhagic Fever Virus
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Test organism (with files)
Ebola Sudan
Test organism (without alignment)
West Nile Virus
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LOC_000PUT6.1
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Display Name: Kazakhstan/LOC_000PUT6.1/2024
B. M. A. Maxat,
M. G. K. Gulzhan,
M. K. T. Kydyrbay,
S. S. K. Serik,
K. B. A. Balzhan &
N. B. R. Botagoz
Sample details
Collection date
2024
Collection date (lower bound)
2024-01-01
Collection date (upper bound)
2024-12-31
Earliest release date
2025-05-21
Collection country
Kazakhstan
Collection subdivision level 1
Turkestan, Arys
Isolate name
KAZ/154/2025
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-09-16 19:41
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Kazakh Scientific Research Veterinary Institute
INSDC
NCBI release date
2025-05-21
INSDC accession L
PV646618.1
INSDC accession S
PV646617.1
Host
Host taxon id
297308
Host name scientific
Ixodoidea
Alignment and QC metrics L
Length L
528
Total SNPs L
88
Total inserted nucs L
0
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
4.36%
Alignment and QC metrics S
Length S
484
Total SNPs S
72
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
28.95%
Submission details
Submission ID
PV646618.1.L/PV646617.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-09-16 19:41:39 UTC
Date released
2025-09-16 19:47:38 UTC
Files
Annotations
LOC_000PUT6.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
A
526
G
L:
C
529
T
L:
T
535
C
L:
G
538
T
L:
C
541
T
L:
T
550
G
L:
G
553
A
L:
A
563
G
L:
A
565
T
L:
A
571
G
L:
G
578
A
L:
G
583
A
L:
C
586
T
L:
G
589
A
L:
A
590
G
L:
C
595
T
L:
G
597
A
L:
T
601
C
Show more
S
S:
T
157
C
S:
C
166
T
S:
G
171
A
S:
C
178
A
S:
A
180
G
S:
T
182
C
S:
G
190
A
S:
G
196
A
S:
C
217
T
S:
G
229
A
S:
C
235
T
S:
T
250
A
S:
G
256
A
S:
A
268
C
S:
G
271
A
S:
T
277
C
S:
T
283
C
S:
T
289
C
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
NP
NP:
S
39
N
NP:
N
42
S
NP:
D
116
E
NP:
T
124
A
NP:
G
125
N
NP:
N
150
H
RdRp
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
T
215
A
RdRp:
K
275
R
RdRp:
I
279
V
Deletions
None
Insertions
None
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