This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PUHS.1

Display Name: Tajikistan/LOC_000PUHS.1/2023-05-23
J. D'Addiego, M. Mullojanova, T. Hikmatov, F. Tishkova & R. Hewson

Sample details

Collection date
2023-05-23
Collection date (lower bound)
2023-05-23
Collection date (upper bound)
2023-05-23
Earliest release date
2025-04-05
Collection country
Tajikistan
Isolate name
CCHFV_14_169

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-16 19:41insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
UK Health Security Agency, Research & Evaluation

INSDC

NCBI release date
2025-04-05
INSDC accession S

Host

Host taxon id
Host name scientific
Hyalomma anatolicum

Alignment and QC metrics S

Length S
1254
Total SNPs S
173
Total inserted nucs S
2
Total deleted nucs S
1
Total ambiguous nucs S
9
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
74.40%

Submission details

Submission ID
PV390612.1.S
Submitting group
Date submitted
2025-09-16 19:41:39 UTC
Date released
2025-09-16 19:47:38 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:A425G
  • S:G428T
  • S:G429A
  • S:A439G
  • S:C445T
  • S:T446C
  • S:A460G
  • S:C478T
  • S:C484A
  • S:C487T
  • S:A490G
  • S:T496C
  • S:C497T
  • S:G499A
  • S:A503C
  • S:C505T
  • S:C514T
  • S:G538A
    • Deletions
    S:1617
    Insertions
    ins_S:1579:A, ins_S:1612:C

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:T124A
  • NP:G125Y
  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:K263R
  • NP:R270K
  • NP:S275N
  • NP:S301G
  • NP:V436I
    • Deletions
    None
    Insertions
    None

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