This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PP4Q.1

Display Name: Iran/LOC_000PP4Q.1/2023-05
B. Mohammadi-Ghalehbin, N. Soozangar, F. Jeddi, H. Mirzanejad-Asl, S. Molaei, S. Habibzadeh, H. Peeri Doghaheh, J. Mohammadshahi & A. Spotin

Sample details

Collection date
2023-05
Collection date (lower bound)
2023-05-01
Collection date (upper bound)
2023-05-31
Earliest release date
2023-10-07
Collection country
Iran
Isolate name
57-203334

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-16 19:41insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Tabriz University od Medical Sceinces, Parasitolgy and Mycology

INSDC

NCBI release date
2023-10-07
INSDC accession S

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics S

Length S
467
Total SNPs S
70
Total inserted nucs S
0
Total deleted nucs S
168
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
37.98%

Submission details

Submission ID
OR391534.1.S
Submitting group
Date submitted
2025-09-16 19:41:39 UTC
Date released
2025-09-16 19:47:06 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:C187T
  • S:G189A
  • S:T199C
  • S:T211C
  • S:C217T
  • S:C244T
  • S:T250G
  • S:G262A
  • S:A268C
  • S:G271A
  • S:T274C
  • S:T283C
  • S:G292A
  • S:C295T
  • S:A298T
  • S:T304C
  • S:C310T
  • S:T313C
    • Deletions
    S:647-814
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:R45K
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
  • NP:H195R
  • NP:D199E
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue