This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PLTE.1

Display Name: Kazakhstan/LOC_000PLTE.1/2025-07
Z. K. Koshemetov, A. A. Kerimbayev, N. S. Kozhabergenov, M. Z. Kaukarbayeva, B. Umuraliyev, A. Isakhan, N. Orazymbetova, Z. B. Kondibayeva, B. S. Usserbayev, A. M. Melisbek, Y. A. Bulatov, A. Adalbekova & K. Z. Bayzhanov

Sample details

Collection date
2025-07
Collection date (lower bound)
2025-07-01
Collection date (upper bound)
2025-07-31
Earliest release date
2025-09-02
Collection country
Kazakhstan
Isolate name
CCHF/2025/Mibulak/KZ

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-05 16:45insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Research Institute for Biological Safety Problems, Qazbiopharm National Holding

INSDC

NCBI release date
2025-09-02
INSDC accession S

Host

Host taxon id
Host name scientific
Hyalomma asiaticum

Alignment and QC metrics S

Length S
1651
Total SNPs S
213
Total inserted nucs S
5
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
98.44%

Submission details

Submission ID
PX210841.1.S
Submitting group
Date submitted
2025-09-05 16:45:15 UTC
Date released
2025-09-05 16:51:36 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:G45T
  • S:A61G
  • S:C64T
  • S:G67A
  • S:G91A
  • S:G99A
  • S:A118G
  • S:C142T
  • S:T157C
  • S:C166T
  • S:C178A
  • S:T181C
  • S:T182C
  • S:T220C
  • S:G229A
  • S:C235T
  • S:A247G
  • S:T250A
    • Deletions
    None
    Insertions
    ins_S:1540:TT, ins_S:1571:C, ins_S:1577:A, ins_S:1618:T

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:R15K
  • NP:D116E
  • NP:T124A
  • NP:G125N
  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:S275N
  • NP:S301G
  • NP:V436I
    • Deletions
    None
    Insertions
    None

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