This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PLD9.1

Display Name: Guinea/LOC_000PLD9.1/2024-12-12
E. V. Naidenova, Y. M. Krasnov, K. S. Zakharov, M. Y. Kartashov, A. V. Shipovalov, A. B. Ibrahim, E. A. Basov, A. P. Smolina, N. P. Guseva, T. A. Polunina, N. V. Kotova, S. D. Katyshev, S. Boumbaly & M. S. Traore

Sample details

Collection date
2024-12-12
Collection date (lower bound)
2024-12-12
Collection date (upper bound)
2024-12-12
Earliest release date
2025-08-09
Collection country
Guinea
Isolate name
663

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-08-29 09:06insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Russian Antiplague Research Institute 'Microbe', Microbiology

INSDC

NCBI release date
2025-08-09
INSDC accession L
INSDC accession M
INSDC accession S

Host

Host taxon id
Host name scientific
Amblyomma variegatum

Alignment and QC metrics L

Length L
11915
Total SNPs L
486
Total inserted nucs L
3
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
826
Total frame shifts L
0
Completeness L
91.56%

Alignment and QC metrics M

Length M
3828
Total SNPs M
408
Total inserted nucs M
9
Total deleted nucs M
9
Total ambiguous nucs M
0
Total unknown nucs M
1432
Total frame shifts M
0
Completeness M
44.65%

Alignment and QC metrics S

Length S
1654
Total SNPs S
171
Total inserted nucs S
19
Total deleted nucs S
18
Total ambiguous nucs S
0
Total unknown nucs S
118
Total frame shifts S
0
Completeness S
91.81%

Submission details

Submission ID
PV987606.1.L/PV987598.1.M/PV987590.1.S
Submitting group
Date submitted
2025-08-29 09:06:25 UTC
Date released
2025-08-29 09:11:43 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:C133T
  • L:C205T
  • L:G217A
  • L:A220G
  • L:C223T
  • L:T229C
  • L:T253C
  • L:T254A
  • L:G286A
  • L:C313T
  • L:A316G
  • L:C331T
  • L:T340C
  • L:C343T
  • L:C445T
  • L:T517C
  • L:C541T
  • L:G553A

    • M

  • M:C651T
  • M:G660A
  • M:C662T
  • M:G667C
  • M:A668T
  • M:A676G
  • M:A677G
  • M:T680A
  • M:G681C
  • M:C683A
  • M:A684T
  • M:T686C
  • M:G693A
  • M:A696T
  • M:T698C
  • M:G699A
  • M:A700G
  • M:C704A

    • S

  • S:G20T
  • S:G54A
  • S:G134A
  • S:G136A
  • S:C142T
  • S:C154T
  • S:T155C
  • S:C166T
  • S:G169A
  • S:T175C
  • S:C178A
  • S:T182C
  • S:G189A
  • S:G190A
  • S:C208T
  • S:C235T
  • S:C244T
  • S:T250A
    • Deletions
    M:1362-1364, M:3585-3590, S:1542-1547, S:1573, S:1574, S:1610-1619
    Insertions
    ins_L:6460:AAA, ins_M:1376:NTA, ins_M:3600:NNNNNN, ins_S:1563:TATG, ins_S:1566:AT, ins_S:1579:ATC, ins_S:1629:CTATCTTTCA

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:A190T
  • GPC:G192A
  • GPC:N196K
  • GPC:D197Q
  • GPC:S198C
  • GPC:A201T
  • GPC:T202S
  • GPC:E203R
  • GPC:H204Q
  • GPC:E206M
  • GPC:S207P
  • GPC:L208S
  • GPC:S211P
  • GPC:P214S
  • GPC:G215N
  • GPC:T221A
  • GPC:I223P
  • GPC:V224N

    • NP

  • NP:V27I
  • NP:Y34H
  • NP:R45K
  • NP:S109N
  • NP:D116E
  • NP:T124S
  • NP:G125N
  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:S301G
  • NP:V436I

    • RdRp

  • RdRp:Y60N
  • RdRp:N206Y
  • RdRp:C422Y
  • RdRp:S498N
  • RdRp:I505T
  • RdRp:C648S
  • RdRp:K673R
  • RdRp:R764K
  • RdRp:T767A
  • RdRp:R770K
  • RdRp:G778D
  • RdRp:N779S
  • RdRp:S782D
  • RdRp:K809R
  • RdRp:G812E
  • RdRp:T876S
  • RdRp:A1038T
  • RdRp:G1164E
    • Deletions
    None
    Insertions
    ins_RdRp:2129:E

    Report an issue with this sequence or metadata

    Create GitHub issue