This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PLCB.1

Display Name: Guinea/LOC_000PLCB.1/2024-12-11
E. V. Naidenova, Y. M. Krasnov, K. S. Zakharov, M. Y. Kartashov, A. V. Shipovalov, A. B. Ibrahim, E. A. Basov, A. P. Smolina, N. P. Guseva, T. A. Polunina, N. V. Kotova, S. D. Katyshev, S. Boumbaly & M. S. Traore

Sample details

Collection date
2024-12-11
Collection date (lower bound)
2024-12-11
Collection date (upper bound)
2024-12-11
Earliest release date
2025-08-09
Collection country
Guinea
Isolate name
650

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-08-29 09:06insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Russian Antiplague Research Institute 'Microbe', Microbiology

INSDC

NCBI release date
2025-08-09
INSDC accession L
INSDC accession M
INSDC accession S

Host

Host taxon id
Host name scientific
Rhipicephalus microplus

Alignment and QC metrics L

Length L
11970
Total SNPs L
417
Total inserted nucs L
3
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
799
Total frame shifts L
0
Completeness L
92.24%

Alignment and QC metrics S

Length S
1655
Total SNPs S
174
Total inserted nucs S
19
Total deleted nucs S
18
Total ambiguous nucs S
0
Total unknown nucs S
96
Total frame shifts S
0
Completeness S
93.18%

Alignment and QC metrics M

Length M
2921
Total SNPs M
298
Total inserted nucs M
1
Total deleted nucs M
0
Total ambiguous nucs M
0
Total unknown nucs M
851
Total frame shifts M
1
Frame shifts M
GPC:490-1685(nt:1560-5147)
Completeness M
38.56%

Submission details

Submission ID
PV987605.1.L/PV987597.1.M/PV987589.1.S
Submitting group
Date submitted
2025-08-29 09:06:25 UTC
Date released
2025-08-29 09:11:43 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:G93A
  • L:G112C
  • L:A113G
  • L:C133T
  • L:C193T
  • L:C205T
  • L:G217A
  • L:A220G
  • L:C223T
  • L:T229C
  • L:T253C
  • L:T254A
  • L:G286A
  • L:G301A
  • L:C313T
  • L:A316G
  • L:C331T
  • L:T340C

    • M

  • M:A1556G
  • M:A1577T
  • M:T1586A
  • M:T1587C
  • M:G1589A
  • M:G1592A
  • M:G1595A
  • M:G1604A
  • M:A1607G
  • M:A1628C
  • M:A1629C
  • M:C1631T
  • M:C1634T
  • M:T1637C
  • M:T1644C
  • M:T1649G
  • M:A1652C
  • M:A1655G

    • S

  • S:G20T
  • S:G54A
  • S:C82T
  • S:A118G
  • S:G136A
  • S:C142T
  • S:C154T
  • S:T155C
  • S:C166T
  • S:G169A
  • S:T175C
  • S:C178A
  • S:T182C
  • S:G189A
  • S:G190A
  • S:C208T
  • S:C217T
  • S:C235T
    • Deletions
    S:1542-1547, S:1573, S:1574, S:1610-1619
    Insertions
    ins_L:6457:AAN, ins_M:1559:A, ins_S:1563:TATG, ins_S:1566:AT, ins_S:1579:ATC, ins_S:1629:CTATCTTTCA

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:Y34H
  • NP:R45K
  • NP:D116E
  • NP:T124S
  • NP:G125N
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:A271S
  • NP:S301G
  • NP:Q405L
  • NP:V436I
  • NP:T439K

    • RdRp

  • RdRp:S6N
  • RdRp:I13V
  • RdRp:Y60N
  • RdRp:N206Y
  • RdRp:C422Y
  • RdRp:S498N
  • RdRp:I505T
  • RdRp:R764K
  • RdRp:T767A
  • RdRp:P774L
  • RdRp:S782D
  • RdRp:K809R
  • RdRp:G812E
  • RdRp:T876S
  • RdRp:N885K
  • RdRp:A1038T
  • RdRp:K1167R
  • RdRp:V1228I
    • Deletions
    None
    Insertions
    ins_RdRp:2127:X

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