This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PL01.1

Display Name: France/LOC_000PL01.1/2024
M. Gasparine & A. Falchi

Sample details

Collection date
2024
Collection date (lower bound)
2024-01-01
Collection date (upper bound)
2024-12-31
Earliest release date
2025-08-10
Collection country
France
Isolate name
3445

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-08-29 09:06insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Corsica, Unite des Virus Emergents

INSDC

NCBI release date
2025-08-10
INSDC accession S

Host

Host taxon id
Host name scientific
Ixodoidea

Alignment and QC metrics S

Length S
1531
Total SNPs S
106
Total inserted nucs S
13
Total deleted nucs S
20
Total ambiguous nucs S
0
Total unknown nucs S
627
Total frame shifts S
5
Frame shifts S
NP:31-73(nt:146-274),NP:79-93(nt:289-334),NP:168-230(nt:557-744),NP:238-244(nt:765-787),NP:250-483(nt:803-1504)
Completeness S
54.49%

Submission details

Submission ID
PV976886.1.S
Submitting group
Date submitted
2025-08-29 09:06:25 UTC
Date released
2025-08-29 09:11:43 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:C166T
  • S:C187T
  • S:G189A
  • S:T199C
  • S:G202A
  • S:A209G
  • S:T220C
  • S:T223C
  • S:C235T
  • S:C241T
  • S:A243C
  • S:T250C
  • S:G262A
  • S:G271A
  • S:T274C
  • S:G278C
  • S:T283C
  • S:T285C
    • Deletions
    S:247, S:275, S:483-485, S:584-586, S:596, S:665, S:745, S:764, S:788, S:802, S:806-809, S:857, S:858
    Insertions
    ins_S:145:C, ins_S:243:ATGT, ins_S:288:C, ins_S:334:CC, ins_S:556:A, ins_S:567:G, ins_S:607:G, ins_S:772:AG

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:I77P
  • NP:Y78T
  • NP:T124A
  • NP:G125N
  • NP:K135*
  • NP:A143D
  • NP:Y156*
  • NP:E161D
  • NP:I246L
    • Deletions
    NP:74, NP:144, NP:237, NP:245
    Insertions
    ins_NP:95:KR

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