This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PKW9.1

Display Name: France/LOC_000PKW9.1/2024
M. Gasparine & A. Falchi

Sample details

Collection date
2024
Collection date (lower bound)
2024-01-01
Collection date (upper bound)
2024-12-31
Earliest release date
2025-08-10
Collection country
France
Isolate name
ECH

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-08-29 09:06insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Corsica, Unite des Virus Emergents

INSDC

NCBI release date
2025-08-10
INSDC accession L

Host

Host taxon id
Host name scientific
Ixodoidea

Alignment and QC metrics L

Length L
11837
Total SNPs L
802
Total inserted nucs L
10
Total deleted nucs L
11
Total ambiguous nucs L
0
Total unknown nucs L
914
Total frame shifts L
5
Frame shifts L
RdRp:263(nt:861-865),RdRp:1028-1111(nt:3157-3409),RdRp:1115-2857(nt:3417-8647),RdRp:2861-2898(nt:8657-8770),RdRp:2902-3946(nt:8780-11914)
Completeness L
90.22%

Submission details

Submission ID
PV976880.1.L
Submitting group
Date submitted
2025-08-29 09:06:25 UTC
Date released
2025-08-29 09:11:43 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:G93A
  • L:T106C
  • L:C117T
  • L:G119C
  • L:A123G
  • L:A126G
  • L:G130C
  • L:T151C
  • L:C153G
  • L:T254A
  • L:C256T
  • L:A257C
  • L:G272A
  • L:T292C
  • L:A298G
  • L:C313T
  • L:A314G
  • L:G323A
    • Deletions
    L:860, L:3156, L:3182-3184, L:3416, L:8656, L:8779, L:8825-8827
    Insertions
    ins_L:865:T, ins_L:3193:AAT, ins_L:3409:T, ins_L:8647:C, ins_L:8770:T, ins_L:8806:GA, ins_L:8811:G

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    RdRp

  • RdRp:S6N
  • RdRp:A14V
  • RdRp:G15R
  • RdRp:Q16R
  • RdRp:Y17C
  • RdRp:S26C
  • RdRp:Y60N
  • RdRp:I61L
  • RdRp:E66K
  • RdRp:R80G
  • RdRp:G83S
  • RdRp:L103I
  • RdRp:S106F
  • RdRp:T115A
  • RdRp:I116V
  • RdRp:I118Y
  • RdRp:E128G
  • RdRp:F133L
    • Deletions
    RdRp:262, RdRp:1114
    Insertions
    None

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