This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PK5S.1

Display Name: LOC_000PK5S.1
R. Lofts, L. Hodgson & J. F. Smith

Submission details

Submission ID
U88416.1.S
Submitting group
Date submitted
2025-07-18 15:35:17 UTC
Date released
2025-07-18 15:40:30 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-18 15:35insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Virology Division, USAMRIID, Bldg. 1425, Fort Detrick, Frederick, MD 21701

Alignment and QC metrics S

Completeness S
100.00%
Length S
1640
Total ambiguous nucs S
0
Total deleted nucs S
38
Total frame shifts S
0
Total inserted nucs S
6
Total SNPs S
254
Total unknown nucs S
0

Sample details

Earliest release date
1997-03-04
Collection date (upper bound)
1997-03-04

INSDC

INSDC accession S
NCBI release date
1997-03-04

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:T39A
  • S:A50G
  • S:G54A
  • S:A61G
  • S:C64T
  • S:G67A
  • S:A78C
  • S:T79C
  • S:A81G
  • S:A85G
  • S:A118G
  • S:A121G
  • S:G122A
  • S:A124T
  • S:C154T
  • S:T157C
  • S:C166T
  • S:T175C
    • Deletions
    S:1507-1512, S:1539-1553, S:1574-1587, S:1619, S:1620, S:1626
    Insertions
    ins_S:1517:GTCATT

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:N8T
  • NP:N9S
  • NP:G23S
  • NP:D116G
  • NP:T124A
  • NP:G125N
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:A256D
  • NP:R270K
  • NP:S275G
  • NP:I277V
  • NP:R298L
  • NP:A299L
  • NP:S301G
  • NP:A307P
  • NP:Y311F
    • Deletions
    None
    Insertions
    None

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