This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PGF9.1

Display Name: USA/LOC_000PGF9.1/2022-09-29
J. Hyeon, Z. H. Helal, N. F. Soriano, D. H. Chung, A. Hunt & G. Risatti

Submission details

Submission ID
PV126617.1
Submitting group
Date submitted
2025-07-15 21:03:54 UTC
Date released
2025-07-15 21:11:59 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-15 21:03insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The University of Connecticut, Dept. of Pathobiology & Veterinary Science

Alignment and QC metrics

Completeness
93.40%
Length
10301
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
100
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2025-06-04
Collection subdivision level 1
Connecticut
Collection country
USA
Collection date
2022-09-29
Collection date (lower bound)
2022-09-29
Collection date (upper bound)
2022-09-29
Isolate name
22_3906

Host

Host name scientific
Buteo jamaicensis
Host taxon id

INSDC

INSDC accession
NCBI release date
2025-06-04
NCBI update date
2025-06-04

Lineage

Lineage
1A

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • A360T
  • C366T
  • C435T
  • C450T
  • G504A
  • T606C
  • A630G
  • G741A
  • T826C
  • T928C
  • C1077T
  • T1442C
  • C1465T
  • A1657G
  • G1662A
  • C1750T
  • C1878T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:R188K

    • NS4B

  • NS4B:I240M

    • NS5

  • NS5:I33T
  • NS5:T897I

    • env

  • env:V159A
  • env:L167F
  • env:T231A

    • prM

  • prM:F155L
    • Deletions
    None
    Insertions
    None

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