This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PGEB.1

Display Name: Armenia/LOC_000PGEB.1/2022
A. Zhirova, Y. Lisitskaya & A. Volynkina

Submission details

Submission ID
PQ878906.1.S
Submitting group
Date submitted
2025-07-17 14:17:04 UTC
Date released
2025-07-17 14:22:19 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-17 14:17insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Stavropol State Research Anti-Plague Institute, Laboratory for diagnostics of viral infections

Alignment and QC metrics S

Completeness S
44.98%
Frame shifts S
NP:270-483(nt:861-1504)
Length S
538
Total ambiguous nucs S
0
Total deleted nucs S
214
Total frame shifts S
1
Total inserted nucs S
0
Total SNPs S
105
Total unknown nucs S
0

Sample details

Earliest release date
2025-03-02
Collection country
Armenia
Collection date
2022
Collection date (lower bound)
2022-01-01
Collection date (upper bound)
2022-12-31
Isolate name
375-ARM-TI-2022

Host

Host name scientific
Ixodoidea
Host taxon id

INSDC

INSDC accession S
NCBI release date
2025-03-02

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:C115T
  • S:A118G
  • S:A121G
  • S:G123C
  • S:T127C
  • S:A130G
  • S:T133C
  • S:C145T
  • S:C154T
  • S:T163C
  • S:G169A
  • S:G171A
  • S:T175G
  • S:C178A
  • S:T182C
  • S:G189A
  • S:G190A
  • S:G196A
    • Deletions
    S:647-860
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:G23A
  • NP:S39N
  • NP:R45K
  • NP:S52G
  • NP:A100T
  • NP:T124A
  • NP:G125S
  • NP:N150S
  • NP:A154S
  • NP:S165P
  • NP:G185S
  • NP:P189S
  • NP:H195R
    • Deletions
    NP:198-269
    Insertions
    None

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