This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PFJ3.1

Italy/LOC_000PFJ3.1/2019-06-11
M. Bisseux, A. Mirand, C. Henquell, J.-L. Bailly, A. Piralla, F. A. M. Giardina & F. Baldanti

Fondazione Irccs Policlinico San Matteo, Microbiology and Virology Department

Sample details

Collection date
2019-06-11
Earliest release date
2025-04-12
Sampling location
Italy
Isolate name
S34_15426_C2_PAV_ITA_11_06_2019

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-14 11:41insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-04-12
NCBI update date
2025-04-12
INSDC accession

Host

Host

Submission details

Submission ID
PQ284451.1
Submitting group
Date submitted
2026-04-14 11:41:36 UTC
Date released
2026-04-14 12:19:19 UTC

Clade

Clade EV-A71
C2

Genotype

Genotype
EV-A71

Alignment and QC

Total SNPs
158
Length
873 (11.8%)
Variant
False

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • T2147C
  • A2148C
  • A2150G
  • C2153A
  • A2156C
  • T2159C
  • C2163T
  • G2168T
  • C2174T
  • C2180A
  • C2192G
  • T2193C
  • G2195A
  • A2198G
  • C2204T
  • C2213T
  • C2216G
  • T2231C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the U22521.1 reference

Substitutions

VP1

  • VP1:K18R
  • VP1:P22R
  • VP1:P30Q
  • VP1:K98E
  • VP1:R145E
  • VP1:D167E
  • VP1:P172Q
  • VP1:S183L

VP3

  • VP3:T232A
  • VP3:E237Q
  • VP3:A239G
Deletions
N/A
Insertions
N/A

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