This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
SeqSets
Login
Loculus
Organisms
CCHF (Multi-Ref)
Crimean-Congo Hemorrhagic Fever Virus
Ebola Sudan
Enterovirus
Test Dummy Organism
Test organism (with files)
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
Crimean-Congo Hemorrhagic Fever Virus
|
Browse data
Submit sequences
Select organism section
Browse data
Submit sequences
LOC_000PFJ3.1
Download
Download FASTA
Download metadata TSV
Tajikistan/LOC_000PFJ3.1/1969
A. N. Lukashev,
A. S. Klimentov,
S. E. Smirnova,
T. K. Dzagurova,
J. F. Drexler &
A. P. Gmyl
Chumakov Institute of Poliomyelitis and Viral Encephalitides
Sample details
Collection date
1969
Earliest release date
2016-12-07
Sampling location
Tajikistan
Isolate name
Gaib
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2016-12-07
INSDC accession L
KX013444.1
INSDC accession M
KX013445.1
INSDC accession S
KX013446.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
KX013444.1.L/KX013445.1.M/KX013446.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-10-19 13:36:32 UTC
Date released
2026-10-19 13:39:39 UTC
Lineage
Segment S Lineage
IV.2
Files
Annotations
LOC_000PFJ3.1.embl
Alignment and QC
Total SNPs L
1611
Total inserted nucs L
38
Total deleted nucs L
2
Length L
12121 (99.8%)
Total SNPs M
1050
Total inserted nucs M
1
Total deleted nucs M
3
Length M
5338 (99.5%)
Total SNPs S
224
Total inserted nucs S
1
Length S
1634 (97.7%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
A
35
G
G
43
C
T
49
C
C
59
T
T
62
C
C
64
T
T
65
G
G
71
T
A
72
T
A
74
G
C
85
T
G
93
A
A
109
G
G
112
A
T
121
C
T
131
A
C
133
T
C
136
T
Show more
M
C
23
T
G
50
A
A
51
G
G
55
A
G
56
A
A
69
G
T
71
G
G
76
T
A
80
G
T
83
C
C
85
T
T
86
C
A
88
G
C
96
T
T
102
C
A
108
G
A
116
T
A
117
G
Show more
S
T
48
C
G
54
A
A
61
G
C
64
T
G
67
A
T
79
C
G
99
A
A
118
G
C
142
T
T
157
C
C
166
T
C
178
A
T
182
C
G
190
A
G
196
A
C
214
T
C
217
T
G
229
A
Show more
Deletions
L
12086, 12087
M
234-236
Insertions
L
ins_66:CC, ins_11931:AT, ins_12051:TAGTCCAATTCTTTCAAC, ins_12108:TTGATTATTTCTAGGG
M
ins_5170:G
S
ins_1574:T
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
H
2
Y
GPC:
S
4
P
GPC:
M
6
V
GPC:
I
9
V
GPC:
L
10
I
GPC:
C
11
Y
GPC:
C
15
Y
GPC:
E
19
G
GPC:
T
20
A
GPC:
S
23
L
GPC:
H
24
L
GPC:
E
26
K
GPC:
R
28
E
GPC:
H
29
Q
GPC:
K
31
E
GPC:
D
33
G
GPC:
T
34
I
GPC:
M
35
T
Show more
NP
NP:
R
15
K
NP:
D
116
E
NP:
T
124
A
NP:
G
125
N
NP:
N
150
H
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
275
N
NP:
S
301
G
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
L
90
I
RdRp:
I
114
V
RdRp:
I
157
M
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
RdRp:
I
279
V
Show more
Deletions
GPC
GPC:45
Insertions
N/A
Nucleotide sequences
Reference-aligned nucleotide sequences
Reference-aligned amino acid sequences
L
M
S
Report an issue with this sequence or metadata
Create GitHub issue