This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PFJ3.1

Tajikistan/LOC_000PFJ3.1/2010
B. Atkinson, J. Chamberlain, C. H. Logue, N. Cook, C. Bruce, S. D. Dowall, R. Hewson & F. Tishkova

Health Protection Agency

Sample details

Collection date
2010
Earliest release date
2012-01-14
Sampling location
Tajikistan
Isolate name
TAJUK #7

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2012-01-14
INSDC accession S

Host

Host

Submission details

Submission ID
JN086996.1.S
Submitting group
Date submitted
2026-09-02 14:11:42 UTC
Date released
2026-09-02 14:12:50 UTC

Lineage

Segment S Lineage
IV.2

Files

Annotations

Alignment and QC

Total SNPs S
174
Length S
1449 (86.7%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • A61G
  • C64T
  • G67A
  • T79C
  • G99A
  • A118G
  • C142T
  • T157C
  • C166T
  • C178A
  • T182C
  • G190A
  • G196A
  • C214T
  • C217T
  • T223A
  • G229A
  • C235T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:R15K
  • NP:D56E
  • NP:D116E
  • NP:T124A
  • NP:G125N
  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:S275N
  • NP:S301G
  • NP:V436I
Deletions
N/A
Insertions
N/A

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