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LOC_000PFJ3.1
Download
Download FASTA
Download metadata TSV
Kazakhstan/LOC_000PFJ3.1/2015
T. Nurmakhanov,
Y. Sansyzbaev,
P. Deryabin,
B. Atshabar,
O. Yeskhojayev,
A. Vilkova,
A. Shevtsov,
R. Hewson &
B. Atkinson
Public Health England, Research
Sample details
Collection date
2015
Earliest release date
2016-07-03
Sampling location
Kazakhstan (South Kazakhstan oblast)
Isolate name
SK 2015/human
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2016-07-03
INSDC accession L segment
KX129739.1
INSDC accession S segment
KX129738.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
KX129739.1.L/KX129738.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-09-15 16:14:23 UTC
Date released
2026-09-15 16:16:27 UTC
Clade & Lineage
Closest reference L segment
singleReference (variant)
Closest reference S segment
S1 (OL774851.1) (variant)
Files
Annotations
LOC_000PFJ3.1.embl
Alignment and QC
Total SNPs L segment
90
Length L segment
562 (4.64%)
Total SNPs S segment
226
Length S segment
1648 (91.3%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
&
OL774851.1
references
Substitutions
L segment
T
499
C
C
505
T
T
509
C
G
511
A
A
523
G
G
538
T
G
543
A
T
550
G
G
553
A
A
563
G
G
577
A
G
578
A
C
586
T
T
587
C
A
590
G
G
592
A
G
597
A
T
613
C
Show more
S segment
T
16
A
C
31
G
T
63
C
C
66
T
A
84
G
A
93
G
A
98
T
A
102
G
G
120
A
T
128
A
G
153
A
T
156
C
T
166
C
A
173
G
G
174
A
G
180
A
A
186
G
C
192
T
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
&
OL774851.1
references
Substitutions
NP
NP:
Y
20
F
NP:
F
30
Y
NP:
K
45
R
NP:
V
83
A
NP:
S
105
L
NP:
T
111
A
NP:
D
116
E
NP:
A
124
S
NP:
Q
179
L
NP:
D
199
E
NP:
R
270
K
NP:
A
307
V
NP:
E
322
D
NP:
I
395
V
NP:
Q
405
L
NP:
R
428
K
RdRp
RdRp:
R
156
K
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
R
302
K
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L segment
S segment
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