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LOC_000PFJ3.1
Download
Download FASTA
Download metadata TSV
Italy/LOC_000PFJ3.1/2017-04-21
E. Mancuso,
A. Polci,
S. G. D'Alessio,
L. Toma,
M. Di Luca,
M. Orsini,
M. Di Domenico,
M. Marcacci,
G. Mancini,
F. Spina,
M. Goffredo &
F. Monaco
Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise 'G. Caporale', Viral, Foreign Deseases of Animals
Sample details
Collection date
2017-04-21
Earliest release date
2018-08-20
Sampling location
Italy
Isolate name
HrTE24364
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-23 16:00
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2018-08-20
INSDC accession M segment
MH595794.1
Submission details
Submission ID
MH595794.1.M
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-23 16:00:01 UTC
Date released
2026-03-23 16:02:34 UTC
Host
Host
Hyalomma rufipes
Files
Annotations
LOC_000PFJ3.1.embl
Alignment and QC
Total SNPs M segment
213
Total deleted nucs M segment
3087
Total unknown nucs M segment
364
Total frame shifts M segment
1
Frame shifts M segment
GPC:440-1685(nt:1404-5143)
Length M segment
1816 (83.2%)
Variant M segment
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
&
MH396653.1
references
Substitutions
M segment
A
310
G
G
313
A
T
326
C
T
328
C
A
331
T
A
341
G
A
342
G
G
344
C
T
346
C
T
347
C
T
350
C
T
352
C
C
353
T
G
362
A
C
364
A
T
368
C
T
370
A
C
375
T
Show more
Deletions
M segment
674-1403, 2066-4142, 4736-5014, 5168
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
&
MH396653.1
references
Substitutions
GPC
GPC:
S
80
P
GPC:
K
85
G
GPC:
G
86
R
GPC:
S
88
P
GPC:
A
92
T
GPC:
S
94
P
GPC:
P
96
L
GPC:
T
99
P
GPC:
S
101
G
GPC:
V
102
T
GPC:
V
103
D
GPC:
S
105
P
GPC:
D
109
A
GPC:
T
110
V
GPC:
S
112
F
GPC:
P
121
S
GPC:
T
122
A
GPC:
P
123
L
Show more
Deletions
GPC
GPC:196-439
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L segment
M segment
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