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LOC_000PFJ3.1
Download
Download FASTA
Download metadata TSV
United_Arab_Emirates/LOC_000PFJ3.1/1998-10-26
M. Zivcec,
L. I. W. Guerrero,
C. G. Albarino,
E. Bergeron,
S. T. Nichol,
C. F. Spiropoulou,
L. Guerrero,
C. Albarino,
C. Spiropoulou &
S. Nichol
Centers for Disease Control and Prevention, Viral Special Pathogens Branch
Sample details
Collection date
1998-10-26
Earliest release date
2017-09-05
Sampling location
United Arab Emirates
Isolate name
813042 UAE
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-05-11 10:16
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2017-09-05
INSDC accession L segment
MF289417.1
INSDC accession M segment
MF289418.1
INSDC accession S segment
MF289419.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
MF289417.1.L/MF289418.1.M/MF289419.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-11 10:16:46 UTC
Date released
2026-05-11 10:20:49 UTC
Clade & Lineage
Closest reference L segment
singleReference (variant)
Closest reference M segment
M (MH396653.1) (variant)
Closest reference S segment
S1 (OL774851.1) (variant)
Files
Annotations
LOC_000PFJ3.1.embl
Alignment and QC
Total SNPs L segment
1658
Total inserted nucs L segment
60
Length L segment
12146 (99.8%)
Total SNPs S segment
230
Total inserted nucs S segment
17
Length S segment
1674 (91.7%)
Total SNPs M segment
45
Total deleted nucs M segment
30
Length M segment
5359 (98.8%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L segment
G
23
T
A
35
G
G
43
T
C
48
T
T
49
C
C
63
G
C
64
T
T
65
C
T
66
C
T
68
C
G
69
A
G
71
C
C
85
T
G
88
A
G
93
A
A
109
G
C
117
A
A
124
G
Show more
M segment
G
65
A
C
284
A
C
451
T
G
634
A
C
720
T
T
804
C
C
817
T
C
895
T
C
970
T
T
1000
C
A
1096
G
A
1130
G
C
1162
T
G
1354
A
C
1381
T
A
1382
G
T
1453
C
C
1525
T
Show more
S segment
C
15
T
T
16
A
C
31
G
T
32
C
C
66
T
A
84
G
T
90
C
A
93
G
A
98
T
A
102
G
C
150
T
G
153
A
T
156
C
T
159
C
T
166
C
A
173
G
G
174
A
G
180
A
Show more
Deletions
M segment
5352-5381
Insertions
L segment
ins_58:T, ins_11917:CA, ins_12094:TATTCCACTTTCTTTGCTGTTCATGTCCGTTTTATTATTTCTGGGGTGTGGGGGGAA
S segment
ins_0:MTMTCWWAGAAACACGT
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
P
66
T
GPC:
S
211
L
GPC:
I
239
T
GPC:
T
348
A
GPC:
I
432
V
GPC:
S
633
P
GPC:
M
676
V
GPC:
R
688
K
GPC:
S
1449
G
GPC:
T
1542
M
NP
NP:
Y
20
F
NP:
K
45
R
NP:
V
83
A
NP:
D
116
E
NP:
A
124
S
NP:
Q
179
L
NP:
D
199
E
NP:
R
270
K
NP:
A
307
V
NP:
E
322
D
NP:
Q
405
L
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
A
14
D
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
G
113
D
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
I
223
V
RdRp:
K
275
R
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L segment
M segment
S segment
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