This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PFJ3.1

Display Name: Netherlands/LOC_000PFJ3.1/2020-01-10
I. Aknouch, I. Garcia-Rodriguez, F. P. Giugliano, C. Calitz, G. Koen, H. van Eijk, N. Johannessson, S. Rebers, L. Brouwer, V. Muncan, K. J. Stittelaar, D. Pajkrt, K. C. Wolthers & A. Sridhar

Sample details

Collection date
2020-01-10
Collection date (lower bound)
2020-01-10
Collection date (upper bound)
2020-01-10
Earliest release date
2023-04-30
Collection country
Netherlands

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-01-22 15:57insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Amsterdam UMC, Medical Microbiology OrganovirLabs

INSDC

NCBI release date
2023-04-30
NCBI update date
2023-04-30
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
327
Total SNPs
56
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
4.41%
Total stop codons
0

Submission details

Submission ID
OP672363.1
Submitting group
Date submitted
2026-01-22 15:57:03 UTC
Date released
2026-01-22 16:10:46 UTC

Genotype

Genotype
EV-A71

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • T2579G
  • C2580A
  • A2581C
  • C2585A
  • C2587T
  • C2588G
  • A2591G
  • C2594G
  • T2600A
  • G2603A
  • G2606A
  • T2618C
  • T2636A
  • C2651T
  • A2654G
  • T2657C
  • A2669G
  • C2675T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U22521.1 reference

    Substitutions

    VP1

  • VP1:Q48T
  • VP1:A50V
  • VP1:I52M
  • VP1:K98E
  • VP1:R145Q
    • Deletions
    None
    Insertions
    None

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