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LOC_000PFJ3.1
Download
Download FASTA
Download metadata TSV
Kazakhstan/LOC_000PFJ3.1/2015
P. Deryabin,
B. Atshabar,
Y. Sansyzbaev,
V. Berezin,
T. Nurmakhanov,
O. Yeskhojayev,
A. Vilkova,
A. Shevtsov,
R. Hewson &
B. Atkinson
Public Health England, Research
Sample details
Collection date
2015
Earliest release date
2016-04-30
Sampling location
Kazakhstan (Maktaaral district)
Isolate name
tick pool #101
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2016-04-30
INSDC accession M
KX096706.1
INSDC accession S
KX096705.1
Host
Host
hard ticks; hardbacked ticks; scale ticks (Hyalomma scupense)
Submission details
Submission ID
KX096706.1.M/KX096705.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-10-13 10:58:13 UTC
Date released
2026-10-13 11:01:31 UTC
Lineage
Segment S Lineage
IV.2
Files
Annotations
LOC_000PFJ3.1.embl
Alignment and QC
Total SNPs M
283
Total ambiguous nucs M
1
Length M
793 (14.8%)
Total SNPs S
74
Length S
510 (30.5%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
M
G
50
T
A
51
G
G
56
A
A
57
C
A
70
G
T
71
A
A
80
G
T
83
C
G
84
T
C
85
T
T
86
C
C
92
T
C
96
T
T
98
C
T
100
C
T
102
C
T
105
C
A
108
T
Show more
S
T
157
C
C
166
T
C
178
A
T
181
C
T
182
C
T
220
C
G
229
A
C
235
T
C
241
T
A
247
G
T
250
A
G
262
A
A
268
C
G
271
A
T
277
C
T
283
C
T
289
C
C
295
T
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
H
2
Y
GPC:
I
3
T
GPC:
S
4
P
GPC:
M
6
L
GPC:
Y
7
C
GPC:
A
8
V
GPC:
I
9
V
GPC:
Q
13
K
GPC:
C
15
W
GPC:
G
16
S
GPC:
G
18
E
GPC:
E
19
G
GPC:
S
23
L
GPC:
H
24
S
GPC:
R
28
Q
GPC:
N
30
S
GPC:
K
31
N
GPC:
D
33
S
Show more
NP
NP:
D
116
E
NP:
T
124
A
NP:
G
125
N
NP:
N
150
H
NP:
H
195
R
NP:
D
199
E
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Reference-aligned nucleotide sequences
Reference-aligned amino acid sequences
L
M
S
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