This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PFH5.1

Italy/LOC_000PFH5.1/2017-04-21
E. Mancuso, A. Polci, S. D'Alessio, L. Toma, M. Di Luca, M. Orsini, M. Di Domenico, M. Marcacci, G. Mancini, F. Spina, M. Goffredo & F. Monaco

Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise 'G. Caporale', Viral, Foreign Deseases of Animals

Sample details

Collection date
2017-04-21
Earliest release date
2018-08-20
Sampling location
Italy
Isolate name
HrTE24364

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-23 16:00insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2018-08-20
INSDC accession S segment

Submission details

Submission ID
MH576575.1.S
Submitting group
Date submitted
2026-03-23 16:00:01 UTC
Date released
2026-03-23 16:02:34 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs S segment
51
Total deleted nucs S segment
844
Total unknown nucs S segment
100
Total frame shifts S segment
1
Frame shifts S segment
NP:397-483(nt:1226-1488)
Length S segment
744 (82.4%)
Variant S segment
False

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • A83G
  • A84G
  • A98T
  • A122T
  • A162C
  • A173G
  • C183T
  • A186G
  • T219C
  • G231A
  • T237C
  • A255G
  • T377G
  • A379T
  • A381T
  • C1227T
  • G1231T
  • A1263G
Deletions

S segment

382-1225
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:K15R
  • NP:Y20F
  • NP:D28V
  • NP:K45R
  • NP:K114Y
Deletions

NP

NP:115-396
Insertions
N/A

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