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LOC_000PFH5.1
Download
Download FASTA
Download metadata TSV
Kazakhstan/LOC_000PFH5.1/2015
T. Nurmakhanov,
Y. Sansyzbaev,
P. Deryabin,
B. Atshabar,
O. Yeskhojayev,
A. Vilkova,
A. Shevtsov,
R. Hewson &
B. Atkinson
Public Health England, Research
Sample details
Collection date
2015
Earliest release date
2016-07-03
Sampling location
Kazakhstan (South Kazakhstan oblast)
Isolate name
SK 2015/human
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2016-07-03
INSDC accession L
KX129739.1
INSDC accession S
KX129738.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
KX129739.1.L/KX129738.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-09-19 07:58:18 UTC
Date released
2026-09-19 08:01:28 UTC
Lineage
Segment S Lineage
IV.1
Files
Annotations
LOC_000PFH5.1.embl
Alignment and QC
Total SNPs S
230
Total inserted nucs S
1
Length S
1648 (98.5%)
Total SNPs L
90
Length L
562 (4.64%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
T
499
C
C
505
T
T
509
C
G
511
A
A
523
G
G
538
T
G
543
A
T
550
G
G
553
A
A
563
G
G
577
A
G
578
A
C
586
T
T
587
C
A
590
G
G
592
A
G
597
A
T
613
C
Show more
S
A
50
G
G
54
A
G
67
A
T
79
C
C
82
T
G
99
A
A
109
G
A
118
G
G
136
A
T
144
A
G
169
A
T
172
C
C
178
A
T
182
C
G
190
A
G
196
A
T
199
C
C
208
T
Show more
Deletions
N/A
Insertions
S
ins_1577:A
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
NP
NP:
R
15
K
NP:
F
30
Y
NP:
V
83
A
NP:
S
105
L
NP:
T
111
A
NP:
D
116
E
NP:
T
124
S
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
301
G
NP:
A
307
V
NP:
E
322
D
NP:
I
395
V
NP:
Q
405
L
NP:
V
436
I
RdRp
RdRp:
R
156
K
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
R
302
K
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
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