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LOC_000PFFA.1
Download
Download FASTA
Download metadata TSV
Oman/LOC_000PFFA.1/1998-07-16
M. Zivcec,
L. Guerrero,
C. Albarino &
C. Spiropoulou
Centers for Disease Control and Prevention, Viral Special Pathogens Branch
Sample details
Collection date
1998-07-16
Earliest release date
2017-04-01
Sampling location
Oman
Isolate name
Oman_812956
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-06-11 10:04
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2017-04-01
INSDC accession L
KY362514.1
INSDC accession M
KY362518.1
INSDC accession S
KY362516.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
KY362514.1.L/KY362518.1.M/KY362516.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-11 10:04:02 UTC
Date released
2026-06-11 10:07:40 UTC
Lineage
Segment S Lineage
IV.1
Files
Annotations
LOC_000PFFA.1.embl
Alignment and QC
Total SNPs M
1021
Total inserted nucs M
1
Total deleted nucs M
6
Length M
5361 (100%)
Total SNPs L
1681
Total inserted nucs L
68
Length L
12176 (100%)
Total SNPs S
227
Total inserted nucs S
1
Length S
1673 (100%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
T
10
C
G
23
T
G
32
A
A
35
G
A
36
T
A
38
G
G
43
C
A
44
G
T
49
C
C
63
G
C
64
T
T
65
C
T
66
C
G
71
C
C
76
T
C
82
T
T
86
C
T
97
C
Show more
M
G
50
T
A
51
G
G
56
A
A
57
C
C
66
T
A
70
G
T
71
A
G
76
T
A
80
G
T
83
C
C
85
T
T
86
C
T
91
C
C
92
T
T
98
C
T
100
C
T
102
C
C
103
T
Show more
S
T
48
C
A
50
G
G
54
A
G
67
A
C
82
T
G
99
A
T
106
C
A
109
G
A
118
G
C
166
T
T
172
C
T
175
C
C
178
A
T
182
C
G
190
A
G
196
A
T
199
C
C
208
T
Show more
Deletions
M
317-322
Insertions
L
ins_58:T, ins_11922:TC, ins_12092:GCTATTACACTTTCTTTATTGTTCTCATCAGTTTTATTATTTAATTGTTTCCAGGGTGTGGGGGG
M
ins_5168:G
S
ins_1577:C
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
I
9
V
GPC:
L
10
F
GPC:
C
15
W
GPC:
G
16
S
GPC:
L
17
P
GPC:
E
19
G
GPC:
H
21
R
GPC:
S
23
L
GPC:
H
24
S
GPC:
R
28
Q
GPC:
K
31
E
GPC:
D
33
G
GPC:
T
34
I
GPC:
M
35
T
GPC:
T
36
R
Show more
NP
NP:
R
15
K
NP:
V
83
A
NP:
D
116
E
NP:
T
124
S
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
V
205
I
NP:
I
246
V
NP:
R
270
K
NP:
S
301
G
NP:
A
307
V
NP:
E
322
D
NP:
Q
405
L
NP:
V
436
I
RdRp
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
I
157
M
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
I
223
M
RdRp:
S
229
Y
RdRp:
K
275
R
RdRp:
I
279
V
Show more
Deletions
GPC
GPC:76, GPC:77
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
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