This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PFFA.1

Kazakhstan/LOC_000PFFA.1/2015
P. Deryabin, B. Atshabar, Y. Sansyzbaev, V. Berezin, T. Nurmakhanov, O. Yeskhojayev, A. Vilkova, A. Shevtsov, R. Hewson & B. Atkinson

Public Health England, Research

Sample details

Collection date
2015
Earliest release date
2016-04-30
Sampling location
Kazakhstan (Sairam district)
Isolate name
tick pool #130

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2016-04-30
INSDC accession S

Host

Host

Submission details

Submission ID
KX096702.1.S
Submitting group
Date submitted
2026-10-13 10:58:13 UTC
Date released
2026-10-13 11:01:31 UTC

Lineage

Segment S Lineage
IV.1

Files

Annotations

Alignment and QC

Total SNPs S
70
Total ambiguous nucs S
2
Length S
523 (31.2%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • C154A
  • C166T
  • G169A
  • T172C
  • C178A
  • T182C
  • G190A
  • T193C
  • T199C
  • C208T
  • C217T
  • A226T
  • G229A
  • G262A
  • A268C
  • G271A
  • T289C
  • C295T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:V83A
  • NP:D116E
  • NP:T124S
  • NP:G125N
  • NP:H195R
  • NP:D199E
Deletions
N/A
Insertions
N/A

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