This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PFAL.1

Bulgaria/LOC_000PFAL.1/2006
N. Kalvatchev, I. Christova, S. Weaver & P. Adams

National Center of Infectious and Parasitic Diseases, Microbiology

Sample details

Collection date
2006
Earliest release date
2012-09-30
Sampling location
Bulgaria
Isolate name
Plovdiv

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2012-09-30
INSDC accession M
INSDC accession S

Host

Host

Submission details

Submission ID
JF807432.1.M/JF807433.1.S
Submitting group
Date submitted
2026-09-11 12:57:02 UTC
Date released
2026-09-11 12:58:59 UTC

Lineage

Segment S Lineage
V

Files

Annotations

Alignment and QC

Total SNPs M
43
Length M
258 (4.81%)
Total SNPs S
80
Length S
508 (30.4%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • A1643T
  • T1644C
  • G1646A
  • T1649G
  • A1652C
  • A1658G
  • C1661A
  • A1662G
  • T1673C
  • A1688G
  • A1694G
  • G1703A
  • T1706A
  • C1715A
  • C1718T
  • G1720A
  • C1721T
  • G1734A

S

  • A150T
  • T157C
  • C166T
  • G171A
  • T175A
  • C178A
  • T182C
  • C187T
  • G189A
  • T199C
  • T211C
  • C217T
  • C244T
  • T250G
  • G256A
  • G262A
  • A268C
  • G271A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:S524G
  • GPC:G543D
  • GPC:G548S
  • GPC:R579K
  • GPC:N592T
  • GPC:V598T
  • GPC:P599L

NP

  • NP:S39N
  • NP:R45K
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
  • NP:G185S
  • NP:H195R
  • NP:D199E
Deletions
N/A
Insertions
N/A

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