This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PF06.1

Display Name: Iraq/LOC_000PF06.1/2023-12-12
S.Y. Albaroodi, W.A. Alobaidii, D.A. Abdullah, S.D. Ola-Fadunsin, F.I. Gimba

Submission details

Submission ID
PP430512.1
Submitter
insdc_ingest_user
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-09-19 17:22:40 UTC
Date released
2024-09-19 17:29:06 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-09-19 17:22insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
College of Veterinary Medicine, University of Mosul, Microbiology

Alignment states and QC metrics

Completeness
21.76%
Length
2400
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
12
Total stop codons
0
Total unknown nucs
0

Sample details

Collection subdivision level 1
Mosul
Collection country
Iraq
Collection date
2023-12-12
Isolate name
SWD74

Host

Host name scientific
Anatidae
Host taxon id
8830

INSDC

INSDC accession
PP430512.1
NCBI release date
2024-03-10
NCBI update date
2024-03-10

Lineage

Lineage
1A

Nucleotide mutations

Substitutions

  • A630G
  • C660T
  • G661C
  • G1074A
  • A1320G
  • T1442C
  • C1465T
  • A1518T
  • T1656C
  • T2057A
  • C2466T
  • G2482C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    NS1

  • NS1:A5P

    • env

  • env:V159A
  • env:L167F
  • env:V364E

    • prM

  • prM:D66H
    • Deletions
    None
    Insertions
    None