This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PDCJ.1

Greece/LOC_000PDCJ.1/2015-06-29
A. Papa, E. Papadopoulou, K. Tsioka, A. Kontana, S. Pappa, A. Melidou, N. D. Giadinis & N. Giadinis

Aristotle University of Thessaloniki, Dept. of Microbiology

Sample details

Collection date
2015-06-29
Earliest release date
2018-03-21
Sampling location
Greece
Isolate name
Pentalofos-Greece-2015

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-20 13:49insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2018-03-21
INSDC accession L segment
INSDC accession M segment
INSDC accession S segment

Host

Host

Submission details

Submission ID
MG516213.1.L/MG516212.1.M/MG516211.1.S
Submitting group
Date submitted
2026-04-20 13:49:12 UTC
Date released
2026-04-20 13:53:53 UTC

Clade & Lineage

Closest reference L segment
singleReference (variant)
Closest reference M segment
M (MH396653.1) (variant)
Closest reference S segment
S11 (MK299338.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs L segment
2710
Total inserted nucs L segment
71
Total deleted nucs L segment
12
Length L segment
12167 (100%)
Total SNPs M segment
1564
Total inserted nucs M segment
83
Total deleted nucs M segment
13
Length M segment
5432 (98.3%)
Total SNPs S segment
59
Total inserted nucs S segment
3
Total deleted nucs S segment
9
Length S segment
1674 (100%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, MH396653.1 & MK299338.1 references

Substitutions

L segment

  • G23T
  • T24C
  • C27T
  • G32A
  • A35G
  • A36T
  • A40T
  • A42G
  • G43T
  • A44G
  • T47A
  • C48T
  • T49A
  • A50G
  • G51A
  • T55C
  • T58C
  • T62G

M segment

  • A26T
  • G34A
  • T36C
  • C39T
  • T40C
  • G46A
  • A47G
  • A48T
  • G52T
  • A53G
  • T55G
  • G56A
  • G58A
  • T63C
  • A66C
  • T67A
  • G72A
  • C73T

S segment

  • C63T
  • C87T
  • A108G
  • T162C
  • G174A
  • C198T
  • T216C
  • A228G
  • A247T
  • A315C
  • T330C
  • C342T
  • A348G
  • A393G
  • A427G
  • G438A
  • T447C
  • T468C
Deletions

L segment

11946-11957

M segment

244-255, 5258

S segment

1605-1611, 1628, 1657
Insertions

L segment

ins_55:A, ins_11927:TTTACAA, ins_11969:CGGGACCCATCAT, ins_12017:GTTGTGGCCTATTCTAGCCAGCATTGTTCCCAGATACTGACCGTCTAACT

M segment

ins_0:TCTC, ins_163:TCATCTGGCAACACAACAAGTGCC, ins_322:CTC, ins_562:TCC, ins_5161:ATTATCTGTACAAAACAAT, ins_5232:GTCTGCTAGTGTGCAATTCCGCCGAACAGC

S segment

ins_0:T, ins_1680:GA

Amino acid substitutions

Substitutions called relative to the NC_005301.3, MH396653.1 & MK299338.1 references

Substitutions

GPC

  • GPC:M1T
  • GPC:H2F
  • GPC:I3L
  • GPC:S4L
  • GPC:M6I
  • GPC:Y7C
  • GPC:A8T
  • GPC:F10L
  • GPC:C11L
  • GPC:L12K
  • GPC:Q13S
  • GPC:L14P
  • GPC:C15Q
  • GPC:L17V
  • GPC:G18S
  • GPC:K19A
  • GPC:N31T
  • GPC:T32H

NP

  • NP:T65S
  • NP:S125G
  • NP:N275S
  • NP:N475S

RdRp

  • RdRp:D2E
  • RdRp:I13L
  • RdRp:S19T
  • RdRp:N24S
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:L64I
  • RdRp:E66K
  • RdRp:S67T
  • RdRp:R70Q
  • RdRp:Q74L
  • RdRp:E75D
  • RdRp:R80K
  • RdRp:K91Q
  • RdRp:L94S
  • RdRp:A122T
  • RdRp:S124N
  • RdRp:D135E
Deletions

GPC

GPC:20-29
Insertions

GPC

ins_GPC:120:GLEITTPTILSDKGT, ins_GPC:220:Q

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