This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PDCJ.1

Philippines/LOC_000PDCJ.1/2008-11-20
T. Imamura, N. Fuji, A. Suzuki, R. Tamaki, M. Saito, R. Aniceto, H. Galang, L. Sombrero, S. Lupisan & H. Oshitani

Virology; Seiryo-cho 1-1, Aoba-ku, Sendai-shi, Miyagi 980-8575

Sample details

Collection date
2008-11-20
Earliest release date
2010-12-22
Sampling location
Philippines

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-15 08:07insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2010-12-22
NCBI update date
2016-07-25
INSDC accession

Host

Host

Submission details

Submission ID
AB569292.1
Submitting group
Date submitted
2026-06-15 08:07:24 UTC
Date released
2026-06-15 08:09:07 UTC

Clade

Clade EV-D68
B

Genotype

Genotype
EV-D68

Alignment and QC

Total SNPs
40
Length
296 (4.02%)

Nucleotide mutations

Mutations called relative to the AY426531.1 reference

Substitutions

  • G2405C
  • T2421C
  • G2425A
  • G2427C
  • T2433C
  • T2454C
  • G2463A
  • T2499C
  • C2500T
  • T2517A
  • C2529T
  • A2568G
  • T2580C
  • G2586A
  • G2589T
  • G2595T
  • T2613C
  • G2614A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the AY426531.1 reference

Substitutions

VP1

  • VP1:G6A
  • VP1:V13I
  • VP1:G76S
  • VP1:K84R
  • VP1:N90D
  • VP1:A92T
  • VP1:S95A
  • VP1:G97Q
  • VP1:H99D
Deletions
N/A
Insertions
N/A

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