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LOC_000PDCJ.1
Download
Download FASTA
Download metadata TSV
Bulgaria/LOC_000PDCJ.1/1981
A. Papa,
E. Papadimitriou &
I. Christova
Medical School, Dept. of Microbiology
Sample details
Collection date
1981
Earliest release date
2011-01-12
Sampling location
Bulgaria
Isolate name
V42/81
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2011-01-12
INSDC accession L segment
GU477491.1
INSDC accession M segment
GU477490.1
INSDC accession S segment
GU477489.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
GU477491.1.L/GU477490.1.M/GU477489.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-09-22 11:49:10 UTC
Date released
2026-09-22 11:50:27 UTC
Clade & Lineage
Closest reference L segment
singleReference (variant)
Closest reference M segment
M (MH396653.1) (variant)
Closest reference S segment
S1 (OL774851.1) (variant)
Files
Annotations
LOC_000PDCJ.1.embl
Alignment and QC
Total SNPs M segment
1079
Total inserted nucs M segment
5
Total deleted nucs M segment
14
Length M segment
5353 (98.3%)
Total SNPs S segment
258
Total inserted nucs S segment
16
Length S segment
1673 (91.7%)
Total SNPs L segment
53
Length L segment
474 (3.91%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L segment
T
6709
C
C
6715
T
A
6724
G
A
6730
G
G
6733
T
T
6745
C
G
6748
A
A
6751
G
C
6757
T
T
6760
A
C
6766
T
T
6769
C
A
6784
T
T
6800
C
G
6805
A
A
6808
T
A
6811
G
A
6835
G
Show more
M segment
T
36
G
G
46
A
A
47
G
T
63
C
T
64
C
T
67
A
G
72
C
A
76
G
T
78
C
T
79
C
G
80
A
T
81
C
T
87
C
C
88
T
T
96
C
T
98
C
C
99
T
G
103
A
Show more
S segment
T
16
A
C
31
G
T
33
C
G
34
T
A
51
G
T
63
C
A
65
G
A
93
G
A
98
T
C
99
T
A
105
G
G
118
A
C
126
T
T
141
C
C
150
T
G
155
A
T
159
A
T
166
C
Show more
Deletions
M segment
323-325, 5276-5286
Insertions
M segment
ins_0:TCTC, ins_5167:T
S segment
ins_0:TCTCAAAGAAACACGT
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
Y
7
C
GPC:
A
8
F
GPC:
V
9
I
GPC:
F
10
L
GPC:
C
11
Y
GPC:
C
15
L
GPC:
K
19
G
GPC:
T
20
A
GPC:
N
21
H
GPC:
G
22
V
GPC:
P
23
Q
GPC:
H
24
P
GPC:
G
26
A
GPC:
N
31
R
GPC:
H
33
N
Show more
NP
NP:
N
9
S
NP:
Y
20
F
NP:
V
27
M
NP:
S
39
N
NP:
A
100
S
NP:
T
102
A
NP:
S
109
N
NP:
T
111
V
NP:
Q
179
L
NP:
G
185
S
NP:
R
195
H
NP:
D
199
E
NP:
K
265
R
NP:
R
270
K
NP:
A
307
P
NP:
Y
311
F
NP:
V
327
I
NP:
N
419
S
NP:
R
428
K
RdRp
RdRp:
A
2330
T
Deletions
GPC
GPC:82
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L segment
M segment
S segment
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