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LOC_000PDCJ.1
Download
Download FASTA
Download metadata TSV
Uganda/LOC_000PDCJ.1/1958
A. N. Lukashev,
A. S. Klimentov,
S. E. Smirnova,
T. K. Dzagurova,
J. F. Drexler &
A. P. Gmyl
Chumakov Institute of Poliomyelitis and Viral Encephalitides
Sample details
Collection date
1958
Earliest release date
2016-12-07
Sampling location
Uganda
Isolate name
Nakiwogo
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-06-04 15:53
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2016-12-07
INSDC accession L
KX013483.1
INSDC accession M
KX013484.1
INSDC accession S
KX013485.1
Host
Host
human
Submission details
Submission ID
KX013483.1.L/KX013484.1.M/KX013485.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-04 15:53:16 UTC
Date released
2026-06-04 15:56:43 UTC
Lineage
Segment S Lineage
II
Files
Annotations
LOC_000PDCJ.1.embl
Alignment and QC
Total SNPs L
2061
Total inserted nucs L
9
Total deleted nucs L
5
Length L
12098 (99.9%)
Total SNPs S
256
Total deleted nucs S
28
Length S
1571 (95.6%)
Total SNPs M
1590
Total inserted nucs M
67
Total deleted nucs M
46
Total frame shifts M
1
Frame shifts M
GPC:1300-1308(nt:3990-4015)
Length M
5371 (99.7%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
G
23
T
A
35
G
G
43
T
T
47
C
C
48
T
T
49
C
G
57
C
C
59
T
C
63
G
T
65
C
G
71
T
A
72
G
A
73
G
C
82
A
G
93
A
A
109
G
T
115
C
G
119
A
Show more
M
G
50
T
A
51
G
A
52
T
T
54
C
G
55
A
G
56
T
A
57
T
T
58
A
T
59
A
A
61
G
T
65
A
A
69
G
A
70
T
T
71
A
T
72
G
G
76
A
T
79
C
A
80
G
Show more
S
A
61
G
C
64
T
G
67
A
G
73
A
A
78
C
A
81
G
A
85
G
G
91
A
A
109
G
A
118
G
A
121
G
G
122
A
A
124
T
C
151
T
C
154
T
T
157
C
C
166
T
T
175
C
Show more
Deletions
L
12026-12030
M
134-151, 726-740, 4016, 5280-5291
S
1541-1554, 1590-1603
Insertions
L
ins_60:C, ins_11931:AT, ins_12108:GGGGGA
M
ins_206:ACCAACTTAGGAATTTCAACTATTCTGAAT, ins_341:GGAGAAGCAACATCCTCTACC, ins_455:ACTATCCCACCAACG, ins_3989:T
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
M
1
K
GPC:
H
2
L
GPC:
I
3
V
GPC:
S
4
L
GPC:
M
6
I
GPC:
Y
7
N
GPC:
A
8
L
GPC:
I
9
T
GPC:
L
12
Q
GPC:
Q
13
L
GPC:
C
15
E
GPC:
G
18
N
GPC:
E
19
S
GPC:
S
68
P
GPC:
L
70
P
GPC:
E
71
S
GPC:
G
72
T
GPC:
S
73
D
Show more
NP
NP:
N
8
T
NP:
N
9
S
NP:
G
23
S
NP:
D
116
G
NP:
T
124
A
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
275
G
NP:
I
277
V
NP:
S
301
G
NP:
A
307
P
NP:
Y
311
F
NP:
T
320
S
NP:
Q
370
E
NP:
V
436
I
RdRp
RdRp:
D
2
E
RdRp:
S
6
N
RdRp:
G
15
S
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
S
67
A
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
E
87
D
RdRp:
I
114
V
RdRp:
I
131
L
RdRp:
T
163
A
RdRp:
R
166
K
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
I
176
M
RdRp:
S
201
G
Show more
Deletions
GPC
GPC:21-64, GPC:198-202
Insertions
GPC
ins_GPC:16:NDRVTSADGINSNTTQTNLGISTI, ins_GPC:137:PDTTTPNSTTSVEPTTIPPTSPIPQATPTPGHGKAP
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
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