This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PDCJ.1

India/LOC_000PDCJ.1/2015
P. D. Yadav, D. Y. Patil, A. M. Shete, P. Kokate, P. Goyal, S. Jadhav, S. Sinha, D. Zawar, S. K. Sharma, A. Kapil, D. K. Sharma, K. J. Upadhyay & D. T. Mourya

National Institute of Virology, Maximum Containment Laboratory

Sample details

Collection date
2015
Earliest release date
2016-11-25
Sampling location
India
Isolate name
Gandhinagar

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2016-11-25
INSDC accession L

Submission details

Submission ID
KT384385.1.L
Submitting group
Date submitted
2026-09-30 15:40:45 UTC
Date released
2026-09-30 15:44:04 UTC

Files

Annotations

Alignment and QC

Total SNPs L
149
Length L
1049 (8.66%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • G370A
  • A376G
  • A379G
  • A385T
  • A388G
  • T394C
  • C415T
  • A416G
  • T442A
  • C445T
  • T466C
  • C475T
  • C481T
  • T499C
  • T509C
  • A523G
  • G538T
  • T550G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

RdRp

  • RdRp:I114V
  • RdRp:T163A
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:I223V
  • RdRp:N236S
  • RdRp:K275R
  • RdRp:I279V
  • RdRp:R302K
Deletions
N/A
Insertions
N/A

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