This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PDCJ.1

Iran/LOC_000PDCJ.1/2009
M. Mahzounieh, E. Dincer, A. Faraji, H. Akin, A. Z. Akkutay & A. Ozkul

Ankara University, Faculty of Veterinary Medicine, Virology Department

Sample details

Collection date
2009
Earliest release date
2010-12-19
Sampling location
Iran
Isolate name
IR50/Sh/09

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2010-12-19
INSDC accession S segment

Host

Host

Submission details

Submission ID
HM853682.1.S
Submitting group
Date submitted
2026-09-16 13:50:39 UTC
Date released
2026-09-16 13:52:47 UTC

Clade & Lineage

Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
29
Length S segment
190 (10.5%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • T465C
  • A474G
  • G477A
  • T480C
  • C481T
  • G483A
  • C498T
  • G504A
  • T513C
  • C519T
  • G522A
  • A528G
  • T534A
  • C537T
  • G543A
  • C562A
  • G564A
  • A567G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:Q179L
  • NP:D199E
Deletions
N/A
Insertions
N/A

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