This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PDCJ.1

unknown/LOC_000PDCJ.1/unknown
P. Despres, S. Paulous & E. Crublet

Sample details

Earliest release date
2018-04-29

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2018-04-29
NCBI update date
2018-04-29
INSDC accession

Submission details

Submission ID
LP944230.1
Submitting group
Date submitted
2026-07-29 08:58:08 UTC
Date released
2026-07-29 09:13:25 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
7
Total deleted nucs
8979
Total frame shifts
1
Frame shifts
env:173-501(nt:1483-2469)
Length
398 (85%)
Amino Acid Mutations from founder clade
  • NS1:D7T
Stop codons
env:79
Total stop codons
1
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • C1453T
  • T1488A
  • A1666C
  • T2291G
  • A2487C
  • G2488A
  • A2489C
Deletions
1458-1482, 1489-1506, 1511-1661, 1669-1715, 1720-1851, 2185-2259, 2265-2288, 2298-2482, 2495-9280, 9289-10824
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:D7T

env

  • env:E79*
Deletions

env

env:165-172
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue