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LOC_000PDCJ.1
Download
Download FASTA
Download metadata TSV
Uganda/LOC_000PDCJ.1/1958
A. N. Lukashev,
A. S. Klimentov,
S. E. Smirnova,
T. K. Dzagurova,
J. F. Drexler &
A. P. Gmyl
Chumakov Institute of Poliomyelitis and Viral Encephalitides
Sample details
Collection date
1958
Earliest release date
2016-12-07
Sampling location
Uganda
Isolate name
Nakiwogo
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-06-01 15:13
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2016-12-07
INSDC accession L segment
KX013483.1
INSDC accession M segment
KX013484.1
INSDC accession S segment
KX013485.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
KX013483.1.L/KX013484.1.M/KX013485.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-01 15:13:21 UTC
Date released
2026-06-01 15:17:45 UTC
Clade & Lineage
Closest reference L segment
singleReference (variant)
Closest reference M segment
M (OR047158.1) (variant)
Closest reference S segment
S1 (OL774851.1) (variant)
Files
Annotations
LOC_000PDCJ.1.embl
Alignment and QC
Total SNPs L segment
2061
Total inserted nucs L segment
9
Total deleted nucs L segment
5
Length L segment
12098 (99.9%)
Total SNPs S segment
256
Total deleted nucs S segment
29
Length S segment
1571 (88.6%)
Total SNPs M segment
1257
Total inserted nucs M segment
43
Total deleted nucs M segment
22
Total frame shifts M segment
1
Frame shifts M segment
GPC:1316-1324(nt:4022-4048)
Length M segment
5371 (99.1%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
OR047158.1
&
OL774851.1
references
Substitutions
L segment
G
23
T
A
35
G
G
43
T
T
47
C
C
48
T
T
49
C
G
57
C
C
59
T
C
63
G
T
65
C
G
71
T
A
72
G
A
73
G
C
82
A
G
93
A
A
109
G
T
115
C
G
119
A
Show more
M segment
C
3
T
A
5
T
G
6
C
C
7
A
G
8
A
C
9
A
C
10
G
G
11
A
C
15
A
C
17
T
C
18
T
C
21
G
G
24
A
G
29
A
C
30
G
G
31
T
G
32
A
G
36
A
Show more
S segment
A
45
G
C
48
T
G
57
A
A
62
C
A
65
G
A
69
G
G
75
A
A
83
G
A
84
G
A
93
G
A
98
T
A
102
G
A
105
G
G
106
A
A
108
T
C
135
T
C
138
T
T
141
C
Show more
Deletions
L segment
12026-12030
M segment
4049, 5258-5278
S segment
1528-1556
Insertions
L segment
ins_60:C, ins_11931:AT, ins_12108:GGGGGA
M segment
ins_39:GTT, ins_4021:T, ins_5192:CTGCCACCTGTAGTGTCACCCGTTTTTTTATGCCACTGT
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
OR047158.1
&
OL774851.1
references
Substitutions
GPC
GPC:
M
1
T
GPC:
L
2
M
GPC:
H
4
C
GPC:
F
5
L
GPC:
E
6
K
GPC:
H
7
L
GPC:
M
8
V
GPC:
F
13
L
GPC:
V
14
T
GPC:
F
15
L
GPC:
I
18
L
GPC:
W
20
E
GPC:
S
21
G
GPC:
G
22
N
GPC:
G
23
D
GPC:
G
24
R
GPC:
L
25
V
GPC:
A
26
T
Show more
NP
NP:
N
8
T
NP:
N
9
S
NP:
K
15
R
NP:
Y
20
F
NP:
G
23
S
NP:
K
45
R
NP:
D
116
G
NP:
Q
179
L
NP:
D
199
E
NP:
R
270
K
NP:
S
275
G
NP:
I
277
V
NP:
A
307
P
NP:
Y
311
F
NP:
T
320
S
NP:
Q
370
E
NP:
R
428
K
RdRp
RdRp:
D
2
E
RdRp:
S
6
N
RdRp:
G
15
S
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
S
67
A
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
E
87
D
RdRp:
I
114
V
RdRp:
I
131
L
RdRp:
T
163
A
RdRp:
R
166
K
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
I
176
M
RdRp:
S
201
G
Show more
Deletions
GPC
GPC:1325
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L segment
M segment
S segment
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