This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PDCJ.1

China/LOC_000PDCJ.1/2017
Y. Zhang, S. Shen, Y. Fang, J. Liu, Z. Su, J. Liang, Z. Zhang, Q. Wu, C. Wang, A. Abudurexiti, Z. Hu, F. Deng, Y. H. Fang, Y. F. Zhang, J. L. Liu, Z. Y. Su, J. H. Liang, Q. L. Wu, Q. G. Wang, Z. H. Hu & Y. J. Zhang

Wuhan Institute of Virology, Chinese Academy of Sciences, State Key Laboratory of Virology

Sample details

Collection date
2017
Earliest release date
2019-09-21
Sampling location
China
Isolate name
FK16116

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-07 16:45insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2019-09-21
INSDC accession L
INSDC accession M
INSDC accession S

Submission details

Submission ID
MG659725.1.L/MG659726.1.M/MG659727.1.S
Submitting group
Date submitted
2026-04-07 16:45:43 UTC
Date released
2026-04-07 16:53:33 UTC

Host

Host

Lineage

Segment S Lineage
IV.1

Files

Annotations

Alignment and QC

Total SNPs M
631
Total inserted nucs M
1
Total deleted nucs M
12
Length M
5341 (99.7%)
Variant M
False
Total SNPs L
1711
Total inserted nucs L
461
Length L
12568 (100%)
Variant L
False
Total SNPs S
228
Total inserted nucs S
141
Length S
1813 (100%)
Variant S
False

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • T10C
  • G23T
  • G32A
  • A35G
  • C37T
  • G43T
  • T49C
  • T52A
  • C59T
  • C63G
  • C64T
  • T65C
  • T66C
  • T68C
  • G69A
  • G71C
  • C85T
  • G88A

M

  • A57G
  • T58C
  • T71C
  • G76A
  • C77T
  • A80G
  • G84A
  • C85T
  • A88G
  • T98C
  • A107G
  • A112G
  • A117G
  • C119T
  • A128G
  • G136A
  • T140C
  • A146G

S

  • C2T
  • A50G
  • G54A
  • G67A
  • T79C
  • C82T
  • A109G
  • A118G
  • T144A
  • C160T
  • G169A
  • T172C
  • C178A
  • T182C
  • G190A
  • G196A
  • T199C
  • C208T
Deletions

M

5289-5300
Insertions

L

ins_11925:GT, ins_12062:CCCAACCGCTAGTCAAC, ins_12091:GCTGTTTACATCCGTCTCATTATTTCCGTTTTATTATTTCTGGGGTGTGGGGGGAACGATTTCTCCTCACTTACTCCG, ins_12108:GATCTCGGAATGGACCCCAACTGCTCCTGCTCCACCGGCGGCTCCTGCACTTGCACCAGCTCCTGCGCCTGCAAGAACTGCAAGTGCACCTCCTGCAAGAAGAGCTGCTGCTCCTGCTGCCCTGCCGGATGTGAGAAGTGTGCCAAGGACTGTGTGTGCAAAGGTGAAGAGGGGGCCAAGGCAGAGGCCGAGAAATGCAGCTGCTGCCAGTGAGGACCCAGACCCTCCCACACAGCCTATGTAA...

M

ins_5169:G

S

ins_0:GGGCTGTGCGGCAACGATATC, ins_1577:A, ins_1672:GAAACACGTGCCGCTTACGCCCACAGTGTTCTCTTGAGTGTTGGCAAAATGGAAAACAAAATCGAGGTGAACAATAAAGATGAGATGAACAGGTGGTTTGAGGAGTTCAAGAAAGGAAA

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:Y7C
  • GPC:I9V
  • GPC:C15Y
  • GPC:E19G
  • GPC:E26G
  • GPC:R28E
  • GPC:T34A
  • GPC:M35V
  • GPC:P38S
  • GPC:G39S
  • GPC:N41S
  • GPC:P42Q
  • GPC:S49R
  • GPC:A51T
  • GPC:L52Q
  • GPC:S53P
  • GPC:I54V
  • GPC:L56P

NP

  • NP:F30Y
  • NP:V83A
  • NP:D116E
  • NP:K119N
  • NP:T124S
  • NP:G125N
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:S301G
  • NP:A307V
  • NP:Y315H
  • NP:T320S
  • NP:E322D
  • NP:Q405L
  • NP:V436I

RdRp

  • RdRp:S6N
  • RdRp:A14D
  • RdRp:S19T
  • RdRp:N24S
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:L103I
  • RdRp:I114V
  • RdRp:R156K
  • RdRp:T163A
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:D212E
Deletions
N/A
Insertions
N/A

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