This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PDCJ.1

Netherlands/LOC_000PDCJ.1/1997
S. van der Sanden, H. van der Avoort, P. Lemey, G. Uslu, M. Koopmans & S. Van der Sanden

Virology; Antonie van Leeuwenhoeklaan 9, Bilthoven 3721 MA

Sample details

Collection date
1997
Earliest release date
2010-04-16
Sampling location
Netherlands
Isolate name
3973

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-27 10:54insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2010-04-16
NCBI update date
2016-07-25
INSDC accession

Host

Host

Submission details

Submission ID
AB524274.1
Submitting group
Date submitted
2026-05-27 10:54:01 UTC
Date released
2026-05-27 10:55:56 UTC

Clade

Clade EV-A71
C2

Genotype

Genotype
EV-A71

Alignment and QC

Total SNPs
149
Length
891 (12%)

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • G2441A
  • C2444T
  • A2447G
  • C2468T
  • A2477G
  • T2480C
  • T2489C
  • A2491G
  • G2492A
  • C2503G
  • T2508C
  • T2513G
  • C2519T
  • C2527A
  • G2529A
  • C2531T
  • C2534G
  • A2537G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the U22521.1 reference

Substitutions

VP1

  • VP1:K18R
  • VP1:P22R
  • VP1:P30Q
  • VP1:D31N
  • VP1:K98E
  • VP1:R145E
  • VP1:D167E
  • VP1:P172Q
  • VP1:S183L
  • VP1:S240T
  • VP1:E244K
  • VP1:S246P
  • VP1:S275A
  • VP1:D282N
  • VP1:T289A
Deletions
N/A
Insertions
N/A

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