This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PDCJ.1

Oman/LOC_000PDCJ.1/1998
M. Zivcec, M. G. Metcalfe, C. G. Albarino, L. W. Guerrero, S. D. Pegan, C. F. Spiropoulou, E. Bergeron & M. L. Khristova

Centers for Disease Control and Prevention, Viral Special Pathogens Branch

Sample details

Collection date
1998
Earliest release date
2015-12-23
Sampling location
Oman
Isolate name
Oman-199809166

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2015-12-23
INSDC accession M segment

Host

Host

Submission details

Submission ID
KR864901.1.M
Submitting group
Date submitted
2026-07-28 16:31:50 UTC
Date released
2026-07-28 16:34:20 UTC

Clade & Lineage

Closest reference M segment
M (MH396653.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs M segment
1035
Total inserted nucs M segment
5
Total deleted nucs M segment
6
Length M segment
5361 (98.3%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & MH396653.1 references

Substitutions

M segment

  • G46T
  • A47G
  • G52A
  • A53C
  • C62T
  • G65A
  • A66G
  • T67A
  • G72T
  • A76G
  • T78C
  • T79C
  • T87C
  • C88T
  • T94C
  • T96C
  • T98C
  • C99T
Deletions

M segment

313-318
Insertions

M segment

ins_0:TCTC, ins_5166:A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & MH396653.1 references

Substitutions

GPC

  • GPC:I3T
  • GPC:S4L
  • GPC:M6V
  • GPC:C15W
  • GPC:G16S
  • GPC:L17P
  • GPC:K19G
  • GPC:N21R
  • GPC:P23L
  • GPC:H24S
  • GPC:G26E
  • GPC:E28Q
  • GPC:N31E
  • GPC:H33G
  • GPC:V34I
  • GPC:M35T
  • GPC:T36R
  • GPC:T37A
Deletions

GPC

GPC:76, GPC:77
Insertions
N/A

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