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LOC_000PDCJ.1
Download
Download FASTA
Download metadata TSV
Australia/MRM938/1963-01-01
B. Huang,
N. A. Prow,
A. F. van den Hurk,
R. J. N. Allcock,
P. R. Moore,
S. L. Doggett &
D. Warrilow
Forensic and Scientific Services, Public and Environmental Health
Sample details
Collection date
1963
Earliest release date
2016-11-09
Sampling location
Australia
Isolate name
MRM938
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2016-11-09
NCBI update date
2020-07-07
INSDC accession
KX394409.1
Host
Host
mosquitos (Culex annulirostris)
Submission details
Submission ID
KX394409.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-09-09 16:34:10 UTC
Date released
2026-09-09 16:48:32 UTC
Lineage
Lineage
1B
Files
Annotations
LOC_000PDCJ.1.embl
Alignment and QC
Total SNPs
1264
Total inserted nucs
1
Total deleted nucs
7
Total ambiguous nucs
1
Length
10766 (97.7%)
Amino Acid Mutations from founder clade
NS1:
L
192
V
NS2A:
V
112
A
NS2A:
I
129
M
NS2B:
S
64
G
NS4B:
I
23
T
NS4B:
A
95
S
capsid:
I
44
T
env:
S
156
F
env:
R
310
K
Variant
True
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
A
50
T
A
51
T
C
52
G
G
126
A
C
210
T
C
216
T
A
218
G
T
227
C
A
231
G
C
255
T
C
258
T
A
267
G
A
285
G
G
307
A
C
336
T
T
339
C
T
348
C
G
363
A
Show more
Deletions
10475-10481
Insertions
ins_10463:T
Amino acid substitutions
Substitutions called relative to the
NC_009942.1
reference
Substitutions
2K
2K:
M
15
L
NS1
NS1:
V
88
I
NS1:
K
102
R
NS1:
V
135
I
NS1:
K
170
R
NS1:
L
192
V
NS1:
I
236
V
NS1:
V
245
I
NS1:
N
264
S
NS1:
S
327
N
NS2A
NS2A:
V
112
A
NS2A:
H
119
Y
NS2A:
I
129
M
NS2A:
L
212
F
NS2B
NS2B:
S
64
G
NS2B:
V
103
A
NS3
NS3:
I
175
V
NS3:
P
249
A
NS3:
K
304
R
NS3:
S
331
A
NS3:
T
356
I
NS3:
V
384
I
NS3:
I
407
V
NS3:
F
486
C
NS3:
A
610
S
NS4A
NS4A:
L
5
F
NS4A:
A
85
V
NS4A:
V
89
A
NS4B
NS4B:
S
15
G
NS4B:
V
23
T
NS4B:
M
29
I
NS4B:
A
95
S
NS4B:
A
114
S
NS4B:
I
176
V
NS4B:
V
186
L
NS5
NS5:
T
25
I
NS5:
I
33
T
NS5:
G
47
R
NS5:
V
49
I
NS5:
I
162
L
NS5:
R
177
K
NS5:
R
247
K
NS5:
D
312
E
NS5:
K
531
R
NS5:
V
731
T
NS5:
A
877
S
capsid
capsid:
K
41
R
capsid:
I
44
T
capsid:
G
71
S
capsid:
V
113
F
capsid:
S
120
G
env
env:
D
67
E
env:
A
89
S
env:
R
93
K
env:
I
126
T
env:
S
156
F
env:
V
159
T
env:
T
162
A
env:
L
167
F
env:
N
199
S
env:
G
229
E
env:
T
231
N
env:
V
338
I
env:
A
365
S
env:
T
410
A
prM
prM:
V
22
I
prM:
S
72
L
prM:
A
105
S
prM:
V
156
A
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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