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LOC_000PDCJ.1
Download
Download FASTA
Download metadata TSV
Kazakhstan/LOC_000PDCJ.1/2015
P. Deryabin,
B. Atshabar,
Y. Sansyzbaev,
V. Berezin,
T. Nurmakhanov,
O. Yeskhojayev,
A. Vilkova,
A. Shevtsov,
R. Hewson &
B. Atkinson
Public Health England, Research
Sample details
Collection date
2015
Earliest release date
2016-04-30
Sampling location
Kazakhstan (Maktaaral district)
Isolate name
tick pool #101
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-06-02 13:18
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2016-04-30
INSDC accession M segment
KX096706.1
INSDC accession S segment
KX096705.1
Host
Host
hard ticks; hardbacked ticks; scale ticks (Hyalomma scupense)
Submission details
Submission ID
KX096706.1.M/KX096705.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-02 13:18:48 UTC
Date released
2026-06-02 13:22:08 UTC
Clade & Lineage
Closest reference M segment
M (MH396653.1) (variant)
Closest reference S segment
S1 (OL774851.1) (variant)
Files
Annotations
LOC_000PDCJ.1.embl
Alignment and QC
Total SNPs M segment
273
Total ambiguous nucs M segment
1
Length M segment
793 (14.5%)
Total SNPs S segment
68
Length S segment
510 (28.2%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
M segment
G
46
T
A
47
G
G
52
A
A
53
C
G
65
A
A
66
G
T
67
A
A
76
G
T
78
C
T
79
C
G
80
T
C
88
T
C
92
T
T
94
C
T
96
C
T
98
C
T
101
C
G
103
A
Show more
S segment
T
141
C
C
150
T
T
165
C
T
166
C
A
173
G
C
183
T
A
186
G
T
204
C
C
225
T
T
234
A
G
246
A
A
252
C
T
261
C
T
267
C
T
273
C
G
282
C
A
309
G
T
318
G
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
H
2
Y
GPC:
I
3
T
GPC:
S
4
P
GPC:
M
6
L
GPC:
Y
7
C
GPC:
A
8
V
GPC:
F
10
L
GPC:
Q
13
K
GPC:
C
15
W
GPC:
G
16
S
GPC:
G
18
E
GPC:
K
19
G
GPC:
N
21
H
GPC:
P
23
L
GPC:
H
24
S
GPC:
G
26
E
GPC:
E
28
Q
GPC:
N
30
S
Show more
NP
NP:
K
45
R
NP:
D
116
E
NP:
N
150
H
NP:
Q
179
L
NP:
D
199
E
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L segment
M segment
S segment
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