This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PDCJ.1

Turkey/LOC_000PDCJ.1/2010-01-01_TO_2010-12-26
A. T. Kalaycioglu, R. Durmaz, Y. Uyar, O. Unaldi, E. Aksekili, A. Ozkul, G. Korukluoglu, M. Ertek & A. Sezgin

Refik Saydam National Public Health Agency, Molecular Microbiology Research and Application Laboratory

Sample details

Collection date
2010-01-01/2010-12-26
Earliest release date
2010-12-26
Sampling location
Turkey
Isolate name
Tokat 442-2010

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2010-12-26
INSDC accession S

Host

Host

Submission details

Submission ID
HQ188916.1.S
Submitting group
Date submitted
2026-09-02 14:11:42 UTC
Date released
2026-09-02 14:12:50 UTC

Lineage

Segment S Lineage
V

Files

Annotations

Alignment and QC

Total SNPs S
80
Length S
523 (31.3%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • T157C
  • C166T
  • G171A
  • T175A
  • C178A
  • T182C
  • C187T
  • G189A
  • T199C
  • T211C
  • C217T
  • C235T
  • C244T
  • T250G
  • C254T
  • G262A
  • A268C
  • T274C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:S39N
  • NP:R45K
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
  • NP:H195R
  • NP:D199E
Deletions
N/A
Insertions
N/A

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