LOC_000PDCJ.1

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India/LOC_000PDCJ.1/2013

P. D. Yadav, D. Y. Patil, A. M. Shete, P. Kokate, P. Goyal, S. Jadhav, S. Sinha, D. Zawar, S. K. Sharma, A. Kapil, D. K. Sharma, K. J. Upadhyay & D. T. Mourya

National Institute of Virology, Maximum Containment Laboratory

Sample details

Collection date

2013

Earliest release date

2016-11-25

Sampling location

India

Isolate name

Surendranagar

Data use terms

OPEN

Data use terms URL

https://#TODO-MVP/open

INSDC

NCBI release date

2016-11-25

INSDC accession L

KT384389.1

INSDC accession M

KT384391.1

INSDC accession S

KT384398.1

Submission details

Submission ID

KT384389.1.L/KT384391.1.M/KT384398.1.S

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-09-19 07:58:18 UTC

Date released

2026-09-19 08:01:28 UTC

Lineage

Segment S Lineage

IV.2

Files

Annotations

LOC_000PDCJ.1.embl

Alignment and QC

Total SNPs L

133

Length L

1104 (9.12%)

Total SNPs M

Length M

954 (17.8%)

Total SNPs S

183

Length S

1448 (86.6%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

G6160A
G6163A
C6173T
G6175A
A6190G
C6205T
A6214C
A6217G
A6220G
A6223G
T6265C
T6269C
G6274A
T6286A
T6292C
G6296A
T6304C
A6307T

M

T3987C
G3992A
T4007C
G4013A
G4016A
T4019C
C4043T
C4061T
T4067C
T4068C
T4082C
A4084G
G4085A
T4091C
T4097C
T4106C
G4115A
C4117A

S

A61G
C64T
G67A
T79C
G99A
A118G
C142T
T157C
C166T
C178A
T182C
G190A
G196A
C214T
C217T
G229A
C235T
C238T

Deletions

N/A

Insertions

N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references