This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
SeqSets
Login
Loculus
Organisms
CCHF (Multi-Ref)
Crimean-Congo Hemorrhagic Fever Virus
Ebola Sudan
Enterovirus
Test Dummy Organism
Test organism (with files)
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
Crimean-Congo Hemorrhagic Fever Virus
|
Browse data
Submit sequences
Select organism section
Browse data
Submit sequences
LOC_000PDCJ.1
Download
Download FASTA
Download metadata TSV
Russia/LOC_000PDCJ.1/1968
A. N. Lukashev,
A. S. Klimentov,
S. E. Smirnova,
T. K. Dzagurova,
J. F. Drexler &
A. P. Gmyl
Chumakov Institute of Poliomyelitis and Viral Encephalitides
Sample details
Collection date
1968
Earliest release date
2016-12-07
Sampling location
Russia (Rostov)
Isolate name
Min
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-06-23 14:57
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2016-12-07
INSDC accession L
KX013480.1
INSDC accession M
KX013481.1
INSDC accession S
KX013482.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
KX013480.1.L/KX013481.1.M/KX013482.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-23 14:57:32 UTC
Date released
2026-06-23 15:00:08 UTC
Lineage
Segment S Lineage
V
Files
Annotations
LOC_000PDCJ.1.embl
Alignment and QC
Total SNPs M
1041
Total inserted nucs M
1
Total deleted nucs M
3
Length M
5343 (99.6%)
Total SNPs L
1309
Total inserted nucs L
33
Total deleted nucs L
10
Total ambiguous nucs L
1
Length L
12114 (99.9%)
Total SNPs S
254
Total inserted nucs S
1
Length S
1618 (96.7%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
G
23
T
A
35
G
A
42
T
G
43
C
T
49
C
A
53
G
G
57
A
T
58
C
C
59
T
C
63
T
C
64
G
T
66
C
A
72
G
A
73
T
C
76
A
A
91
G
G
93
A
C
100
T
Show more
M
T
40
A
G
50
A
A
51
G
T
67
C
T
68
C
A
69
G
T
71
A
G
76
C
A
80
G
G
84
A
T
86
C
C
92
T
T
100
C
T
102
C
C
103
T
A
108
G
A
112
G
T
113
C
Show more
S
T
49
C
A
50
T
G
54
A
T
79
C
A
81
G
G
99
A
G
100
A
A
109
G
C
115
T
A
121
G
G
134
A
C
142
T
T
157
C
C
166
T
G
171
A
T
175
A
C
178
A
T
182
C
Show more
Deletions
L
12069-12078
M
333-335
Insertions
L
ins_67:C, ins_11928:CT, ins_12108:TACTAGTTTCATTATTTGCAGGGTGTGGGG
M
ins_5171:T
S
ins_1579:C
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
Y
7
C
GPC:
A
8
F
GPC:
C
11
Y
GPC:
C
15
L
GPC:
E
19
G
GPC:
T
20
A
GPC:
S
23
Q
GPC:
H
24
S
GPC:
E
26
A
GPC:
R
28
E
GPC:
K
31
G
GPC:
D
33
N
GPC:
M
35
T
GPC:
T
37
A
GPC:
G
39
S
Show more
NP
NP:
N
9
S
NP:
R
15
K
NP:
V
27
M
NP:
S
39
N
NP:
R
45
K
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
T
124
A
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
S
223
L
NP:
I
246
V
NP:
K
265
R
NP:
R
270
K
NP:
S
301
G
NP:
A
307
P
Show more
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
D
55
A
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
A
202
V
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
218
R
RdRp:
I
223
L
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
V
352
I
RdRp:
N
448
S
Show more
Deletions
GPC
GPC:77
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
Report an issue with this sequence or metadata
Create GitHub issue