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LOC_000PD40.1
Download
Download FASTA
Download metadata TSV
USA/LOC_000PD40.1/2018
A. Fall,
O. Abdullah,
J. Norton,
P. Morris &
H. H. Mostafa
Johns Hopkins School of Medicine, Pathology, Molecular Virology
Sample details
Collection date
2018
Earliest release date
2024-09-10
Sampling location
USA
Isolate name
JH-EV-103/2018
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-04-14 11:41
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2024-09-10
NCBI update date
2024-09-10
INSDC accession
PQ238624.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
PQ238624.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-04-14 11:41:36 UTC
Date released
2026-04-14 12:19:19 UTC
Clade
Clade EV-D68
B3
Genotype
Genotype
EV-D68
Alignment and QC
Total SNPs
867
Total deleted nucs
36
Length
7166 (97.8%)
Variant
False
Nucleotide mutations
Mutations called relative to the
AY426531.1
reference
Substitutions
C
177
T
G
197
A
C
203
T
T
222
C
A
232
T
T
262
C
G
263
A
C
268
T
G
272
T
T
279
C
G
292
A
T
307
G
G
333
A
T
334
C
G
435
A
A
495
G
A
496
G
A
507
G
Show more
Deletions
619, 688-722
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
AY426531.1
reference
Substitutions
2A
2A:
I
22
T
2A:
V
37
I
2A:
R
65
K
2A:
Q
83
R
2A:
A
99
V
2A:
V
144
A
2B
2B:
I
64
V
2C
2C:
S
22
A
2C:
K
58
N
2C:
R
72
Q
2C:
S
98
A
2C:
A
102
M
2C:
N
273
G
2C:
T
275
A
2C:
T
277
V
2C:
V
304
I
3A
3A:
A
13
T
3A:
V
53
L
3B
3B:
V
13
I
3C
3C:
I
46
T
3C:
N
50
D
3C:
C
93
Y
3D
3D:
N
6
S
3D:
M
11
V
3D:
S
41
P
3D:
N
95
S
3D:
E
101
D
3D:
Q
130
H
3D:
V
277
I
3D:
I
278
V
3D:
K
307
R
3D:
D
335
N
3D:
I
360
V
VP1
VP1:
S
1
I
VP1:
N
2
D
VP1:
V
13
I
VP1:
N
29
T
VP1:
A
30
F
VP1:
G
76
S
VP1:
K
84
R
VP1:
N
90
D
VP1:
A
92
T
VP1:
S
95
T
VP1:
G
97
Q
VP1:
H
99
D
VP1:
K
110
R
VP1:
N
142
S
VP1:
D
144
N
VP1:
S
145
N
VP1:
M
148
V
VP1:
K
168
E
Show more
VP2
VP2:
S
59
A
VP2:
S
73
A
VP2:
N
74
T
VP2:
Y
98
H
VP2:
D
136
N
VP2:
N
144
D
VP2:
R
151
A
VP2:
I
167
L
VP2:
V
195
A
VP2:
V
211
I
VP2:
V
225
M
VP3
VP3:
P
8
I
VP3:
I
40
V
VP3:
M
46
V
VP3:
I
47
V
VP3:
D
59
E
VP3:
G
60
S
VP3:
N
62
V
VP3:
R
68
K
VP3:
V
73
A
VP3:
Q
74
L
VP3:
A
75
T
VP3:
L
77
V
VP3:
S
180
N
VP4
VP4:
I
18
V
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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