This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PD40.1

Iran/LOC_000PD40.1/2015
N. Shahhosseini & S. Chinikar

Bernhard Nocht Institute for Tropical Medicine

Sample details

Collection date
2015
Earliest release date
2017-02-28
Sampling location
Iran
Isolate name
CHH

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-05 15:32insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2017-02-28
INSDC accession S segment

Host

Host

Submission details

Submission ID
KU707898.1.S
Submitting group
Date submitted
2026-06-05 15:32:12 UTC
Date released
2026-06-05 15:35:15 UTC

Clade & Lineage

Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
224
Total inserted nucs S segment
16
Length S segment
1673 (91.7%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • T16A
  • C31G
  • T63C
  • A65G
  • A84G
  • A93G
  • A98T
  • C99T
  • A102G
  • C150T
  • G153A
  • T156C
  • T166C
  • A173G
  • G174A
  • G180A
  • A186G
  • C192T
Deletions
N/A
Insertions

S segment

ins_0:TCTCAAAGAAACACGT

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:N9S
  • NP:Y20F
  • NP:K45R
  • NP:V83A
  • NP:D116E
  • NP:A124S
  • NP:Q179L
  • NP:D199E
  • NP:R270K
  • NP:A307V
  • NP:E322D
  • NP:Q405L
  • NP:R428K
Deletions
N/A
Insertions
N/A

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