This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PD40.1

unknown/LQ868188.1/unknown
G. Ciaramella, S. Himansu, E. Y. Huang & T. Zaks

Sample details

Earliest release date
2018-09-19

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-22 14:38insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2018-09-19
NCBI update date
2018-09-19
INSDC accession

Host

Host

Submission details

Submission ID
LQ868188.1
Submitting group
Date submitted
2026-05-22 14:37:53 UTC
Date released
2026-05-22 14:53:57 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
10
Total deleted nucs
165
Length
1506 (15.2%)
Amino Acid Mutations from founder clade
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C1377T
  • A1401G
  • T1442C
  • C1465T
  • A1701G
  • T1965C
  • C2025T
  • C2151T
  • C2371T
  • C2466T
Deletions

802-966
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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