This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PCZA.1

Iran/LOC_000PCZA.1/2015
N. Shahhosseini & S. Chinikar

Bernhard Nocht Institute for Tropical Medicine, Virology

Sample details

Collection date
2015
Earliest release date
2016-12-31
Sampling location
Iran
Isolate name
IR-T1-HMA-Chabahar

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-19 14:43insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2016-12-31
INSDC accession S segment

Host

Host

Submission details

Submission ID
KU242339.1.S
Submitting group
Date submitted
2026-06-19 14:43:05 UTC
Date released
2026-06-19 14:45:22 UTC

Clade & Lineage

Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
66
Length S segment
516 (28.6%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • G153A
  • T156C
  • T166C
  • A173G
  • G174A
  • G180A
  • A186G
  • C192T
  • C201T
  • G231A
  • A252C
  • T258C
  • T273C
  • G282T
  • T287C
  • G306T
  • A309G
  • T318G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:K45R
  • NP:V83A
  • NP:T111P
  • NP:D116E
  • NP:A124S
  • NP:Q179L
  • NP:D199E
Deletions
N/A
Insertions
N/A

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