This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PCFD.1

Turkey/LOC_000PCFD.1/2004
M. Zivcec, L. Guerrero, C. Albarino, C. Spiropoulou, P. E. Rollin, T. G. Ksiazek & S. T. Nichol

Centers for Disease Control and Prevention, Viral Special Pathogens Branch

Sample details

Collection date
2004
Earliest release date
2017-09-06
Sampling location
Turkey
Isolate name
Tur_2004_813137_M

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-20 13:49insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2017-09-06
INSDC accession M segment

Host

Host

Submission details

Submission ID
MF511226.1.M
Submitting group
Date submitted
2026-04-20 13:49:12 UTC
Date released
2026-04-20 13:53:53 UTC

Clade & Lineage

Closest reference M segment
M (MH396653.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs M segment
1062
Total inserted nucs M segment
5
Total deleted nucs M segment
3
Length M segment
5357 (98.1%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & MH396653.1 references

Substitutions

M segment

  • T36A
  • G46A
  • A47G
  • T63C
  • T64C
  • T67A
  • G72C
  • A76G
  • T78C
  • G80A
  • T81C
  • C88T
  • T90C
  • T96C
  • T98C
  • C99T
  • G103A
  • A104G
Deletions

M segment

323-325
Insertions

M segment

ins_0:TCTC, ins_5167:T

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & MH396653.1 references

Substitutions

GPC

  • GPC:M1T
  • GPC:I3T
  • GPC:S4L
  • GPC:M6V
  • GPC:Y7C
  • GPC:A8F
  • GPC:V9I
  • GPC:F10L
  • GPC:C11Y
  • GPC:C15L
  • GPC:G16S
  • GPC:L17R
  • GPC:G18R
  • GPC:K19G
  • GPC:T20A
  • GPC:N21H
  • GPC:P23Q
  • GPC:H24S
Deletions

GPC

GPC:77
Insertions
N/A

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