This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PCFD.1

Display Name: Taiwan/LOC_000PCFD.1/2005
S. W. Huang, Y. W. Hsu, D. J. Smith, D. Kiang, H. P. Tsai, K. H. Lin, S. M. Wang, C. C. Liu, I. J. Su, J. R. Wang, S.-W. Hunag, Y.-W. Hsu, H.-P. Tsai, K.-H. Lin, S.-M. Wang, C.-C. Liu, I.-J. Su & J.-R. Wang

Sample details

Collection date
2005
Collection date (lower bound)
2005-01-01
Collection date (upper bound)
2005-12-31
Earliest release date
2009-11-08
Collection country
Taiwan
Isolate name
N2121-TW05

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-01-07 17:00insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
National Cheng Kung University, Department of Medical Laboratory Science and Biotechnology

INSDC

NCBI release date
2009-11-08
NCBI update date
2009-11-08
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
7404
Total SNPs
1443
Total inserted nucs
10
Total deleted nucs
14
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
100.00%
Total stop codons
0

Submission details

Submission ID
FJ357374.1
Submitting group
Date submitted
2026-01-07 17:00:16 UTC
Date released
2026-01-07 17:02:17 UTC

Clade

Clade EV-A71
C4

Genotype

Genotype
EV-A71

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • C28T
  • T36C
  • T48A
  • T51C
  • A54T
  • T61C
  • A76G
  • C90A
  • T95C
  • T99A
  • C106A
  • T138C
  • T142C
  • G143A
  • G145A
  • A148G
  • T149C
  • A150T
    • Deletions
    20, 101-103, 119, 120, 693, 707, 743, 7333, 7337-7340
    Insertions
    ins_10:C, ins_128:C, ins_701:CT, ins_738:GCT, ins_7326:GG, ins_7328:A

    Amino acid mutations

    Mutations called relative to the U22521.1 reference

    Substitutions

    2A

  • 2A:N19S
  • 2A:T26N
  • 2A:V82I
  • 2A:F83Y
  • 2A:E102Q
  • 2A:S129N

    • 2B

  • 2B:R11D
  • 2B:N30D
  • 2B:H31Y
  • 2B:V47I
  • 2B:S85A
  • 2B:M95I

    • 2C

  • 2C:I21V
  • 2C:F22S
  • 2C:I37V
  • 2C:V60I
  • 2C:A75V
  • 2C:I81S
  • 2C:R151H
  • 2C:A173T
  • 2C:V200I
  • 2C:T271S
  • 2C:N315S

    • 3A

  • 3A:S27G
  • 3A:E39D

    • 3B

  • 3B:P9Q
  • 3B:I10V
  • 3B:V15T

    • 3C

  • 3C:I15V
  • 3C:A18V
  • 3C:I36V
  • 3C:V49I
  • 3C:I54V
  • 3C:V56I
  • 3C:V75I
  • 3C:C89F
  • 3C:V93N
  • 3C:T95S
  • 3C:G96T
  • 3C:I109M
  • 3C:P144A
  • 3C:I157V
  • 3C:A169G

    • 3D

  • 3D:M6V
  • 3D:R10K
  • 3D:H31Y
  • 3D:T44H
  • 3D:Q56H
  • 3D:H68Y
  • 3D:V74I
  • 3D:T75K
  • 3D:Q76E
  • 3D:D89E
  • 3D:K94Q
  • 3D:Y106N
  • 3D:V134T
  • 3D:T138V
  • 3D:R140K
  • 3D:L143F
  • 3D:N154Y
  • 3D:S163R

    • VP1

  • VP1:K18R
  • VP1:P22Q
  • VP1:P30Q
  • VP1:D31N
  • VP1:K98E
  • VP1:R145E
  • VP1:D167E
  • VP1:P172Q
  • VP1:S183L
  • VP1:S240T
  • VP1:E244K
  • VP1:S246P
  • VP1:I249V
  • VP1:S275A
  • VP1:D282N

    • VP2

  • VP2:N45S
  • VP2:P94Q
  • VP2:I108V
  • VP2:N143D
  • VP2:M198I
  • VP2:T200A
  • VP2:F224Y

    • VP3

  • VP3:D93N
  • VP3:M100L
  • VP3:T166A
  • VP3:T232A
  • VP3:E237Q
  • VP3:A239G
    • Deletions
    None
    Insertions
    None

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