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LOC_000PCFD.1
Download
Download FASTA
Download metadata TSV
Tajikistan/LOC_000PCFD.1/1969
A. N. Lukashev,
A. S. Klimentov,
S. E. Smirnova,
T. K. Dzagurova,
J. F. Drexler &
A. P. Gmyl
Chumakov Institute of Poliomyelitis and Viral Encephalitides
Sample details
Collection date
1969
Earliest release date
2016-12-07
Sampling location
Tajikistan
Isolate name
Gaib
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-05-22 00:28
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2016-12-07
INSDC accession L segment
KX013444.1
INSDC accession M segment
KX013445.1
INSDC accession S segment
KX013446.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
KX013444.1.L/KX013445.1.M/KX013446.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-22 00:28:14 UTC
Date released
2026-05-22 00:31:11 UTC
Clade & Lineage
Closest reference L segment
singleReference (variant)
Closest reference M segment
M (MH396653.1) (variant)
Closest reference S segment
S1 (OL774851.1) (variant)
Files
Annotations
LOC_000PCFD.1.embl
Alignment and QC
Total SNPs L segment
1611
Total inserted nucs L segment
38
Total deleted nucs L segment
2
Length L segment
12121 (99.8%)
Total SNPs M segment
1052
Total inserted nucs M segment
1
Total deleted nucs M segment
3
Length M segment
5338 (97.9%)
Total SNPs S segment
227
Length S segment
1634 (90.5%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L segment
A
35
G
G
43
C
T
49
C
C
59
T
T
62
C
C
64
T
T
65
G
G
71
T
A
72
T
A
74
G
C
85
T
G
93
A
A
109
G
G
112
A
T
121
C
T
131
A
C
133
T
C
136
T
Show more
M segment
C
19
T
G
46
A
A
47
G
G
51
A
G
52
A
T
67
G
G
72
T
A
76
G
T
78
C
T
79
C
A
84
G
C
92
T
T
98
C
G
103
A
A
104
G
A
112
T
T
116
A
G
120
A
Show more
S segment
T
16
A
C
31
G
T
32
C
G
34
A
A
45
G
C
48
T
T
63
C
A
84
G
A
98
T
A
102
G
C
126
T
T
141
C
C
150
T
T
166
C
A
173
G
G
174
A
G
180
A
C
183
T
Show more
Deletions
L segment
12086, 12087
M segment
230-232
Insertions
L segment
ins_66:CC, ins_11931:AT, ins_12051:TAGTCCAATTCTTTCAAC, ins_12108:TTGATTATTTCTAGGG
M segment
ins_5165:A
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
H
2
Y
GPC:
S
4
P
GPC:
M
6
V
GPC:
F
10
I
GPC:
C
11
Y
GPC:
C
15
Y
GPC:
K
19
G
GPC:
T
20
A
GPC:
N
21
H
GPC:
P
23
L
GPC:
H
24
L
GPC:
G
26
K
GPC:
H
29
Q
GPC:
N
31
E
GPC:
H
33
G
GPC:
V
34
I
GPC:
M
35
T
GPC:
T
36
A
Show more
NP
NP:
Y
20
F
NP:
K
45
R
NP:
D
116
E
NP:
N
150
H
NP:
Q
179
L
NP:
D
199
E
NP:
R
270
K
NP:
S
275
N
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
L
90
I
RdRp:
I
114
V
RdRp:
I
157
M
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
RdRp:
I
279
V
Show more
Deletions
GPC
GPC:45
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L segment
M segment
S segment
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