This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PCFD.1

Display Name: Turkey/LOC_000PCFD.1/2016-07-01
D. A. Bente & G. Akyildiz

Sample details

Collection date
2016-07-01
Collection date (lower bound)
2016-07-01
Collection date (upper bound)
2016-07-01
Earliest release date
2020-05-04
Collection country
Turkey
Isolate name
nymph1

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-05 09:16insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Texas Medical Branch, Microbiology & Immunology

INSDC

NCBI release date
2020-05-04
INSDC accession S

Host

Host taxon id
Host name scientific
Hyalomma aegyptium

Alignment and QC metrics S

Length S
211
Total SNPs S
35
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
11.68%
Total stop codons S
0

Submission details

Submission ID
MN864494.1.S
Submitting group
Date submitted
2026-02-05 09:16:07 UTC
Date released
2026-02-05 09:20:02 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S

  • S:A245G
  • S:G246A
  • S:A252C
  • S:A255G
  • S:T258C
  • S:T267C
  • S:G276A
  • S:G282T
  • S:T288C
  • S:C294T
  • S:A309G
  • S:A315G
  • S:A321G
  • S:A333G
  • S:G337T
  • S:G339A
  • S:C342A
  • S:T348C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3 & OL774851.1 references

    Substitutions

    NP

  • NP:A100S
  • NP:D107G
  • NP:S109N
  • NP:T111A
    • Deletions
    None
    Insertions
    None

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