This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PCBM.1

India/LOC_000PCBM.1/2014
P. D. Yadav, A. M. Shete & D. T. Mourya

National Institute of Virology, Maximum Containment Laboratory

Sample details

Collection date
2014
Earliest release date
2017-09-06
Sampling location
India
Isolate name
NIV143253

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2017-09-06
INSDC accession L segment
INSDC accession S segment

Submission details

Submission ID
KT384382.1.L/KT384400.1.S
Submitting group
Date submitted
2026-07-03 09:31:09 UTC
Date released
2026-07-03 09:34:51 UTC

Clade & Lineage

Closest reference L segment
singleReference (variant)
Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs L segment
64
Length L segment
573 (4.73%)
Total SNPs S segment
31
Length S segment
261 (14.5%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

L segment

  • A6616G
  • A6628T
  • T6643C
  • T6653C
  • A6655G
  • T6658C
  • T6676C
  • T6685C
  • C6688T
  • C6703T
  • T6709C
  • T6712C
  • A6730G
  • G6733T
  • C6757T
  • T6760G
  • T6769C
  • A6784T

S segment

  • C150T
  • T166C
  • A173G
  • G174A
  • G180A
  • C183T
  • A186G
  • C198T
  • C201T
  • C222T
  • G231A
  • G240A
  • A252C
  • T261C
  • T267C
  • T273C
  • G282T
  • C300T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:K45R
  • NP:D116E

RdRp

  • RdRp:S2308P
  • RdRp:A2330T
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue