This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PCAP.1

Display Name: France/LOC_000PCAP.1
J. Jacques, H. Moret, D. Minette, N. Jovenin, V. Brodard, G. Deslee, F. Lebargy, J. Motte & L. Andreoletti

Sample details

Collection date (upper bound)
2007-03-21
Earliest release date
2007-03-21
Collection country
France
Collection subdivision level 1
Champagne ardennes
Isolate name
FR-10-2001-20

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-24 08:53insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Jacques J., Laboratoire De Virologie, UFR de medecine, 51 rue cognacq jay, Reims, 51095

INSDC

NCBI release date
2007-03-21
NCBI update date
2016-07-14
INSDC accession

Alignment and QC metrics

Length
331
Total SNPs
71
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
4.47%
Total stop codons
0

Submission details

Submission ID
AM492501.1
Submitting group
Date submitted
2025-12-24 08:53:43 UTC
Date released
2025-12-24 08:54:53 UTC

Clade

Clade CV-A16
B1c

Genotype

Genotype
CV-A16

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • A2595G
  • C2601A
  • C2604G
  • C2607A
  • T2610G
  • A2619T
  • C2620A
  • A2621G
  • G2622T
  • T2625C
  • G2626A
  • T2634C
  • A2637T
  • A2640G
  • C2643T
  • C2644A
  • G2646A
  • G2655A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions

    VP1

  • VP1:Q59S
  • VP1:E61K
  • VP1:T79A
  • VP1:M119L
  • VP1:A139V
  • VP1:Y155F
    • Deletions
    None
    Insertions
    None

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