This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PC41.1

Display Name: Uganda/LOC_000PC41.1/2000
Lopera, J. G.; Bradford, R.; Rashid, S.; Shifflett, J.; Towle, T.; Eskandarinezhad, S.; Bruce, C.; Frank, A.; Sohn, J.-W.; Benton, B.

Submission details

Submission ID
MT583346.1
Submitting group
Date submitted
2025-05-08 15:58:25 UTC
Date released
2025-05-08 15:58:44 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-05-08 15:58insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
ATCC/BEI Resources, Sequencing and Bioinformatics Center

Alignment and QC metrics

Completeness
99.94%
Length
18866
Total ambiguous nucs
2
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
2
Total unknown nucs
0

Sample details

Earliest release date
2021-08-17
Collection country
Uganda
Collection date
2000
Collection date (lower bound)
2000-01-01
Collection date (upper bound)
2000-12-31
Isolate name
Ebolavirus Gulu H.sapiens-tc/2000

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2021-08-17
NCBI update date
2021-08-17

Nucleotide mutations

Mutations called relative to the NC_002549.1 reference

Substitutions

  • C5320T
  • G5902T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_002549.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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