This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PC17.1

China/LOC_000PC17.1/2013-06
L. Jianxiong, S. Yong, X. Ying, G. Tian, X. Gang, Z. Jun, L. Shiwen, X. Fang & L. Xiaoqing

Jiangxi Center for Disease Control and Prevention, Institute of disease testing

Sample details

Collection date
2013-06
Earliest release date
2020-10-27
Sampling location
China (Jiangxi)
Isolate name
JX2013-1195-CA16

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2020-10-27
NCBI update date
2020-10-27
INSDC accession

Host

Host

Submission details

Submission ID
MT350189.1
Submitting group
Date submitted
2026-10-06 22:33:41 UTC
Date released
2026-10-06 22:42:30 UTC

Clade

Clade CV-A16
B1b

Genotype

Genotype
CV-A16

Alignment and QC

Total SNPs
215
Length
887 (12%)

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions
  • T2448G
  • G2452C
  • G2453C
  • A2454C
  • C2463T
  • G2475A
  • G2476A
  • T2478C
  • C2481A
  • C2483A
  • T2484C
  • T2485A
  • C2486A
  • C2487T
  • G2489A
  • T2493G
  • G2494A
  • G2495A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the U05876.1 reference

Substitutions

VP1

  • VP1:G3P
  • VP1:A11T
  • VP1:T13N
  • VP1:S14N
  • VP1:R15Q
  • VP1:G17N
  • VP1:A19S
  • VP1:S22A
  • VP1:L23M
  • VP1:E26L
  • VP1:N33E
  • VP1:E36S
  • VP1:L43V
  • VP1:Q59S
  • VP1:E61K
  • VP1:C68S
  • VP1:T79A
  • VP1:M119L
Deletions
N/A
Insertions
N/A

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