This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PC17.1

LOC_000PC17.1
D. S. Millar & J. R. Meruki

Sample details

Earliest release date
2010-03-18

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2010-03-18
INSDC accession L segment

Submission details

Submission ID
FV537247.1.L
Submitting group
Date submitted
2026-09-16 13:50:39 UTC
Date released
2026-09-16 13:52:47 UTC

Clade & Lineage

Closest reference L segment
singleReference (variant)

Files

Annotations

Alignment and QC

Total SNPs L segment
2353
Length L segment
12108 (100%)
Stop codons L segment
RdRp:11,RdRp:16,RdRp:34,RdRp:74,RdRp:149,RdRp:160,RdRp:180,RdRp:190,RdRp:220,RdRp:226,RdRp:230,RdRp:239,RdRp:284,RdRp:292,RdRp:295,RdRp:298,RdRp:335,RdRp:415,RdRp:420,RdRp:445,RdRp:474,RdRp:493,RdRp:567,RdRp:574,RdRp:579,RdRp:600,RdRp:635,RdRp:652,RdRp:667,RdRp:680,RdRp:682,RdRp:698,RdRp:706,RdRp:714,RdRp:777,RdRp:780,RdRp:781,RdRp:815,RdRp:820,RdRp:829,RdRp:881,RdRp:913,RdRp:960,...
Total stop codons L segment
161

Nucleotide mutations

Mutations called relative to the NC_005301.3 reference

Substitutions

L segment

  • C2T
  • C4T
  • C13T
  • C17T
  • C18T
  • C19T
  • C20T
  • C21T
  • C22T
  • C27T
  • C28T
  • C29T
  • C31T
  • C37T
  • C39T
  • C46T
  • C48T
  • C59T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 reference

Substitutions

RdRp

  • RdRp:L7F
  • RdRp:T10I
  • RdRp:Q11*
  • RdRp:A14V
  • RdRp:Q16*
  • RdRp:S19F
  • RdRp:P21F
  • RdRp:S26F
  • RdRp:R33W
  • RdRp:Q34*
  • RdRp:P35F
  • RdRp:H43Y
  • RdRp:A46V
  • RdRp:T49I
  • RdRp:P51F
  • RdRp:T54I
  • RdRp:H56Y
  • RdRp:S57L
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue