This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PC17.1

India/LOC_000PC17.1/2013
P. D. Yadav, A. M. Shete & D. T. Mourya

National Institute of Virology, Maximum Containment Laboratory

Sample details

Collection date
2013
Earliest release date
2017-09-06
Sampling location
India
Isolate name
NIV130776

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-04 16:51insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2017-09-06
INSDC accession S segment

Submission details

Submission ID
KT384397.1.S
Submitting group
Date submitted
2026-06-04 16:51:08 UTC
Date released
2026-06-04 16:54:45 UTC

Clade & Lineage

Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
187
Length S segment
1447 (80.1%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • A45G
  • C48T
  • T63C
  • A84G
  • A98T
  • A102G
  • C126T
  • T141C
  • C150T
  • T166C
  • A173G
  • G174A
  • G180A
  • C183T
  • A186G
  • C198T
  • C201T
  • C222T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:Y20F
  • NP:K45R
  • NP:D116E
  • NP:N150H
  • NP:Q179L
  • NP:D199E
  • NP:R270K
  • NP:S275N
  • NP:K354R
  • NP:R428K
Deletions
N/A
Insertions
N/A

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