This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PC17.1

Turkey/LOC_000PC17.1/2004
M. Zivcec, L. Guerrero, C. Albarino, C. Spiropoulou, P. E. Rollin, T. G. Ksiazek & S. T. Nichol

Centers for Disease Control and Prevention, Viral Special Pathogens Branch

Sample details

Collection date
2004
Earliest release date
2017-09-06
Sampling location
Turkey
Isolate name
Tur_2004_813048_S

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-30 18:12insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2017-09-06
INSDC accession S segment

Submission details

Submission ID
MF511207.1.S
Submitting group
Date submitted
2026-03-30 18:11:55 UTC
Date released
2026-03-30 18:15:46 UTC

Host

Host

Clade & Lineage

Closest reference S segment
S1 (OL774851.1)

Files

Annotations

Alignment and QC

Total SNPs S segment
246
Length S segment
1636 (90.6%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • T16A
  • C31G
  • T33C
  • G34T
  • A51G
  • T63C
  • A65G
  • A93G
  • A98T
  • C99T
  • G118A
  • C126T
  • T141C
  • C150T
  • G155A
  • T159A
  • T166C
  • C171T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:N9S
  • NP:Y20F
  • NP:V27M
  • NP:S39N
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:Q179L
  • NP:D199E
  • NP:K265R
  • NP:R270K
  • NP:A307P
  • NP:Y311F
  • NP:V327I
  • NP:N419S
  • NP:R428K
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue