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LOC_000PC17.1
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Display Name: China/LOC_000PC17.1/1980
A. Moming,
Q. Zhu,
Y. Bai,
J. Jin,
Q. Wu,
Z. Su,
S. Tang,
Y. Zhang,
S. Shen &
F. Deng
Submission details
Submission ID
OR047175.1.L/OR047155.1.M/OR047135.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-07-07 22:46:02 UTC
Date released
2025-07-07 22:50:26 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-07-07 22:46
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Wuhan Institute of Virology, Chinese Academy of Sciences
Alignment and QC metrics L
Completeness L
100.00%
Length L
12430
Total ambiguous nucs L
0
Total deleted nucs L
3
Total frame shifts L
0
Total inserted nucs L
325
Total SNPs L
1571
Total unknown nucs L
0
Alignment and QC metrics M
Completeness M
97.34%
Length M
5340
Total ambiguous nucs M
0
Total deleted nucs M
12
Total frame shifts M
0
Total inserted nucs M
129
Total SNPs M
995
Total unknown nucs M
0
Alignment and QC metrics S
Completeness S
100.00%
Length S
1800
Total ambiguous nucs S
0
Total deleted nucs S
1
Total frame shifts S
0
Total inserted nucs S
129
Total SNPs S
210
Total unknown nucs S
0
Sample details
Earliest release date
2023-08-21
Collection country
China
Collection date
1980
Collection date (lower bound)
1980-01-01
Collection date (upper bound)
1980-12-31
Isolate name
BA8004
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession L
OR047175.1
INSDC accession M
OR047155.1
INSDC accession S
OR047135.1
NCBI release date
2023-08-21
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
T
1
C
L:
T
10
G
L:
A
14
G
L:
T
16
A
L:
G
23
T
L:
T
33
C
L:
A
35
G
L:
G
43
C
L:
T
49
C
L:
C
63
G
L:
C
64
T
L:
T
65
C
L:
T
66
C
L:
G
69
A
L:
G
71
T
L:
G
93
A
L:
A
109
G
L:
T
121
A
Show more
M
M:
C
2
A
M:
C
4
T
M:
T
12
A
M:
A
13
G
M:
T
29
C
M:
G
50
T
M:
A
51
G
M:
G
56
A
M:
A
57
C
M:
A
69
G
M:
A
70
G
M:
T
71
A
M:
A
75
G
M:
A
80
G
M:
C
81
T
M:
G
84
T
M:
C
85
T
M:
T
86
C
Show more
S
S:
A
7
C
S:
T
48
C
S:
G
54
A
S:
A
61
G
S:
C
64
T
S:
G
67
A
S:
G
99
A
S:
A
118
G
S:
C
142
T
S:
C
154
A
S:
T
157
C
S:
C
166
T
S:
C
178
A
S:
T
181
C
S:
T
182
C
S:
G
229
A
S:
G
232
A
S:
C
235
T
Show more
Deletions
L:11981, L:11982, L:12034, M:271-273, M:5209-5217, S:1615
Insertions
ins_S:9:TATCTT, ins_S:1667:C, ins_S:1672:CTGCGCTTCTTGCCGCTCCTCCGTCGC, ins_S:1577:A, ins_S:0:GTAACCATCAACCATGTTTATTTTAACTGCTTATATAATCCTGCTTTATTAACT, ins_S:3:TCTTATTTCTTTCGTTTTAAACACTTAAAGGGCTGTGCGG, ins_M:0:GGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTA, ins_M:5171:C, ins_M:263:CTT, ins_M:8:TTGCTGCAGTTA, ins_M:15:CGTAGTTGGATCTTGGGAGCGG,...
Show more
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
H
2
Y
GPC:
I
3
T
GPC:
S
4
P
GPC:
M
6
L
GPC:
Y
7
C
GPC:
I
9
V
GPC:
C
15
W
GPC:
G
16
S
GPC:
G
18
E
GPC:
E
19
G
GPC:
T
20
S
GPC:
S
23
L
GPC:
H
24
S
GPC:
E
26
K
GPC:
R
28
Q
GPC:
N
30
S
GPC:
K
31
N
GPC:
D
33
S
Show more
NP
NP:
R
15
K
NP:
D
116
E
NP:
T
124
A
NP:
N
150
H
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
275
N
NP:
I
277
V
NP:
S
301
G
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
G
83
D
RdRp:
G
113
D
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
E
167
G
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
Show more
Deletions
GPC:197, GPC:209, GPC:210
Insertions
ins_GPC:212:QPV
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