This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PC17.1

Iran/LOC_000PC17.1/2015-10-01
M. Salehi-Vaziri, V. Baniasadi, M. Mirghiasi, T. Jalali, S. Khakifirouz, S. Azad-Manjiri, R. Zarandi & M. Fazlalipour

Tehran University of Medical Sciences, Virology

Sample details

Collection date
2015-10-01
Earliest release date
2016-03-23
Sampling location
Iran
Isolate name
Iran-4675

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-01 15:13insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2016-03-23
INSDC accession S segment

Host

Host

Submission details

Submission ID
KT899991.1.S
Submitting group
Date submitted
2026-06-01 15:13:21 UTC
Date released
2026-06-01 15:17:45 UTC

Clade & Lineage

Closest reference S segment
S11 (MK299338.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
53
Length S segment
516 (30.7%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & MK299338.1 references

Substitutions

S segment

  • C144T
  • T153C
  • C156T
  • T162C
  • T171C
  • A177T
  • T181C
  • G183A
  • A189G
  • T216C
  • A228G
  • C237T
  • A247T
  • T255C
  • T258G
  • G264A
  • A270G
  • T288C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & MK299338.1 references

Substitutions

NP

  • NP:T65S
  • NP:E161D
  • NP:S185N
Deletions
N/A
Insertions
N/A

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