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LOC_000PC17.1
Download
Download FASTA
Download metadata TSV
Spain/LOC_000PC17.1/2016-05-12
M. Bisseux,
A. Mirand,
C. Henquell,
J.-L. Bailly,
C. Andres,
J. Vila &
A. Anton
Centre National de Reference Enterovirus et Parechovirus - Chu Clermont Ferrand, Virologie
Sample details
Collection date
2016-05-12
Earliest release date
2025-04-12
Sampling location
Spain
Isolate name
S23_HUVH16864_C1R5_BAR_ESP_12_05_2016
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2025-04-12
NCBI update date
2025-04-12
INSDC accession
PQ284444.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
PQ284444.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-09-09 13:33:52 UTC
Date released
2026-09-09 13:42:45 UTC
Clade
Clade EV-A71
C1-like
Genotype
Genotype
EV-A71
Alignment and QC
Total SNPs
1376
Total inserted nucs
7
Total deleted nucs
9
Total unknown nucs
4
Length
7332 (98.9%)
Nucleotide mutations
Mutations called relative to the
U22521.1
reference
Substitutions
T
61
C
T
63
A
T
67
A
C
69
T
A
76
G
C
90
A
T
99
C
G
100
C
A
123
G
A
124
C
C
126
T
T
135
C
T
138
C
T
142
C
G
143
A
A
146
G
A
148
G
T
149
C
Show more
Deletions
94, 185, 308, 698-700, 706, 7339, 7340
Insertions
ins_104:C, ins_128:CT, ins_686:ATTA
Amino acid substitutions
Substitutions called relative to the
U22521.1
reference
Substitutions
2A
2A:
T
26
N
2A:
V
82
I
2A:
F
83
Y
2A:
E
102
V
2A:
S
129
N
2B
2B:
R
11
D
2C
2C:
F
22
S
2C:
N
48
S
2C:
V
60
I
2C:
I
81
S
2C:
R
151
H
2C:
A
173
T
2C:
V
200
I
2C:
T
214
A
2C:
Y
243
F
2C:
T
271
S
3A
3A:
E
39
D
3B
3B:
A
6
V
3B:
P
9
Q
3B:
I
10
T
3C
3C:
A
18
V
3C:
I
36
V
3C:
V
49
I
3C:
I
54
V
3C:
C
89
F
3C:
V
93
S
3C:
T
95
S
3C:
G
96
S
3C:
I
109
M
3C:
P
144
A
3C:
A
169
G
3C:
G
173
S
3C:
S
177
G
3D
3D:
M
6
V
3D:
R
10
K
3D:
T
44
H
3D:
V
74
I
3D:
T
75
R
3D:
Q
76
E
3D:
D
89
E
3D:
N
91
D
3D:
K
94
Q
3D:
E
105
D
3D:
Y
106
N
3D:
V
134
T
3D:
T
138
V
3D:
R
140
K
3D:
L
143
F
3D:
N
154
Y
3D:
S
163
R
3D:
L
165
M
Show more
VP1
VP1:
V
16
M
VP1:
K
18
R
VP1:
P
22
Q
VP1:
P
30
Q
VP1:
D
31
N
VP1:
S
36
N
VP1:
K
98
E
VP1:
R
145
E
VP1:
D
167
E
VP1:
P
172
Q
VP1:
S
183
L
VP1:
S
240
T
VP1:
E
244
K
VP1:
S
246
P
VP1:
I
262
V
VP1:
S
275
A
VP1:
D
282
N
VP2
VP2:
N
45
S
VP2:
P
94
Q
VP2:
N
143
D
VP2:
I
170
V
VP2:
M
198
I
VP2:
T
200
A
VP3
VP3:
M
100
L
VP3:
T
232
S
VP3:
E
237
Q
VP3:
A
239
G
VP4
VP4:
T
7
A
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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