This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PC17.1

Iran/LOC_000PC17.1/2014
P. Biglari, S. Chinikar, H. Belqeiszadeh, Z. Telmadarraiy, E. Mostafavi, M. Ghaffari, S. Javaherizadeh, N. Nowotny, A. R. Fooks & N. Shahhosseini

Bernhard Nocht Institute for Tropical Medicine

Sample details

Collection date
2014
Earliest release date
2016-09-24
Sampling location
Iran
Isolate name
Iran/IR-T2-HAN/2014

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-01 12:06insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2016-09-24
INSDC accession S

Host

Host

Submission details

Submission ID
KT931949.1.S
Submitting group
Date submitted
2026-06-01 12:06:04 UTC
Date released
2026-06-01 12:10:31 UTC

Lineage

Segment S Lineage
V

Files

Annotations

Alignment and QC

Total SNPs S
74
Length S
508 (30.4%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • T157C
  • C166T
  • G171A
  • T175A
  • C178A
  • T182C
  • C187T
  • G189A
  • T199C
  • T211C
  • C217T
  • C244T
  • T250G
  • G262A
  • A268C
  • T274C
  • T283C
  • G292A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:S39N
  • NP:R45K
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125S
  • NP:H195R
  • NP:D199E
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue