This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PBZB.1

Display Name: Turkey/LOC_000PBZB.1/2017
M. O. Timurkan & H. Aydin

Sample details

Collection date
2017
Collection date (lower bound)
2017-01-01
Collection date (upper bound)
2017-12-31
Earliest release date
2020-03-28
Collection country
Turkey
Isolate name
TR/ATRVIN2014/OHE/21/M

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-12 15:10insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Ataturk University, Faculty of Veterinary Medicine, Departmet of Virology

INSDC

NCBI release date
2020-03-28
INSDC accession M

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics M

Length M
422
Total SNPs M
76
Total inserted nucs M
0
Total deleted nucs M
0
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
7.86%

Submission details

Submission ID
MT178320.1.M
Submitting group
Date submitted
2025-09-12 15:10:31 UTC
Date released
2025-09-12 15:15:01 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • M:C4671T
  • M:T4676C
  • M:A4678G
  • M:A4694T
  • M:C4697T
  • M:A4713G
  • M:A4730G
  • M:A4736G
  • M:T4742A
  • M:T4743C
  • M:G4745A
  • M:C4748T
  • M:A4751G
  • M:G4757A
  • M:T4763A
  • M:C4769T
  • M:A4778G
  • M:C4781T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:H1527Y
  • GPC:K1529R
  • GPC:E1534D
  • GPC:N1541D
  • GPC:S1564D
  • GPC:K1569R
  • GPC:S1589G
  • GPC:G1590S
  • GPC:I1591V
  • GPC:V1595F
  • GPC:M1597I
  • GPC:F1600L
  • GPC:I1607V
  • GPC:I1610V
  • GPC:R1618K
  • GPC:K1652R
  • GPC:N1655S
  • GPC:K1661R
    • Deletions
    None
    Insertions
    None

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