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LOC_000PBYD.1
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Display Name: China/LOC_000PBYD.1/1977
A. Moming,
Q. Zhu,
Y. Bai,
J. Jin,
Q. Wu,
Z. Su,
S. Tang,
Y. Zhang,
S. Shen &
F. Deng
Submission details
Submission ID
OR047177.1.L/OR047157.1.M/OR047137.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-07-08 17:25:07 UTC
Date released
2025-07-08 17:29:32 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-07-08 17:25
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Wuhan Institute of Virology, Chinese Academy of Sciences
Alignment and QC metrics L
Completeness L
100.00%
Length L
12318
Total ambiguous nucs L
0
Total deleted nucs L
24
Total frame shifts L
0
Total inserted nucs L
234
Total SNPs L
1589
Total unknown nucs L
0
Alignment and QC metrics M
Completeness M
100.00%
Length M
5530
Total ambiguous nucs M
0
Total deleted nucs M
11
Total frame shifts M
0
Total inserted nucs M
175
Total SNPs M
595
Total unknown nucs M
0
Alignment and QC metrics S
Completeness S
95.04%
Length S
1632
Total ambiguous nucs S
0
Total deleted nucs S
40
Total frame shifts S
0
Total inserted nucs S
83
Total SNPs S
186
Total unknown nucs S
0
Sample details
Earliest release date
2023-08-21
Collection country
China
Collection date
1977
Collection date (lower bound)
1977-01-01
Collection date (upper bound)
1977-12-31
Isolate name
BA7708
INSDC
INSDC accession L
OR047177.1
INSDC accession M
OR047157.1
INSDC accession S
OR047137.1
NCBI release date
2023-08-21
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
C
2
T
L:
C
4
G
L:
A
6
C
L:
A
9
T
L:
T
10
A
L:
A
11
G
L:
C
13
G
L:
C
39
A
L:
G
41
A
L:
G
45
A
L:
C
46
G
L:
G
54
T
L:
C
59
T
L:
T
61
G
L:
T
67
A
L:
G
69
T
L:
G
88
A
L:
G
93
A
Show more
M
M:
C
4
T
M:
A
7
G
M:
T
68
C
M:
G
76
A
M:
A
80
G
M:
C
85
T
M:
A
88
G
M:
C
92
T
M:
A
107
G
M:
A
112
G
M:
A
117
G
M:
C
119
T
M:
C
126
T
M:
A
128
G
M:
G
136
A
M:
A
146
G
M:
G
149
A
M:
G
156
A
Show more
S
S:
C
12
G
S:
A
13
G
S:
T
48
C
S:
G
54
A
S:
A
61
G
S:
C
64
T
S:
G
67
A
S:
G
91
A
S:
G
99
A
S:
A
118
G
S:
C
139
T
S:
C
142
T
S:
T
157
C
S:
C
166
T
S:
C
178
A
S:
T
182
C
S:
C
187
A
S:
G
229
A
Show more
Deletions
L:16-28, L:31-34, L:70, L:71, L:11966, L:11967, L:11981, L:11982, L:12057, M:5289-5299, S:1539-1556, S:1562-1583
Insertions
ins_S:14:AAAGGCCTGGAGCTATTCCT, ins_S:8:TCGGGG, ins_S:1530:T, ins_S:0:CACTATGGTCACCGCCTTGAAGGGTTTCACTGACA, ins_S:3:GTCCAGAGTCTACCCCAGATC, ins_M:0:AAAGAATTGAAAGGCAAAGATTTCCATATAT, ins_M:13:ATGATTTGCTGAGAGCTCTGTCTTATCAATATACTTACTTTCTTGTG, ins_M:5168:G, ins_M:8:TATTACTTATTCCTCCGGGTTC, ins_M:5366:TAGCCTGTCTTCCTGTAGTAAAGGAGGTTCAAAATTTAATAAATGTGGGCATATATAAGTTACTACCAGAGAAC, ins_L:12091:CCCTC,...
Show more
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
Y
7
C
GPC:
I
9
V
GPC:
C
15
Y
GPC:
G
22
R
GPC:
H
24
S
GPC:
R
28
E
GPC:
D
33
N
GPC:
T
34
V
GPC:
M
35
V
GPC:
N
41
S
GPC:
P
42
Q
GPC:
S
44
P
GPC:
P
47
L
GPC:
A
51
T
GPC:
S
53
P
GPC:
I
54
V
GPC:
P
58
S
GPC:
L
70
P
Show more
NP
NP:
R
15
K
NP:
D
44
E
NP:
D
116
E
NP:
T
124
A
NP:
G
125
N
NP:
N
150
H
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
275
N
NP:
S
301
G
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
I
45
M
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
E
167
G
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
RdRp:
I
279
V
Show more
Deletions
None
Insertions
None
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