This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

Display Name: China/LOC_000PBYD.1/1977
A. Moming, Q. Zhu, Y. Bai, J. Jin, Q. Wu, Z. Su, S. Tang, Y. Zhang, S. Shen & F. Deng

Submission details

Submission ID
OR047177.1.L/OR047157.1.M/OR047137.1.S
Date submitted
2025-07-08 17:25:07 UTC
Date released
2025-07-08 17:29:32 UTC

Data use terms

Data use terms
OPEN
Data use terms URL

Authors

Author affiliations
Wuhan Institute of Virology, Chinese Academy of Sciences

Alignment and QC metrics L

Completeness L
100.00%
Length L
12318
Total ambiguous nucs L
0
Total deleted nucs L
24
Total frame shifts L
0
Total inserted nucs L
234
Total SNPs L
1589
Total unknown nucs L
0

Alignment and QC metrics M

Completeness M
100.00%
Length M
5530
Total ambiguous nucs M
0
Total deleted nucs M
11
Total frame shifts M
0
Total inserted nucs M
175
Total SNPs M
595
Total unknown nucs M
0

Alignment and QC metrics S

Completeness S
95.04%
Length S
1632
Total ambiguous nucs S
0
Total deleted nucs S
40
Total frame shifts S
0
Total inserted nucs S
83
Total SNPs S
186
Total unknown nucs S
0

Sample details

Earliest release date
2023-08-21
Collection country
China
Collection date
1977
Collection date (lower bound)
1977-01-01
Collection date (upper bound)
1977-12-31
Isolate name
BA7708

INSDC

INSDC accession L
INSDC accession M
INSDC accession S
NCBI release date
2023-08-21

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:C2T
  • L:C4G
  • L:A6C
  • L:A9T
  • L:T10A
  • L:A11G
  • L:C13G
  • L:C39A
  • L:G41A
  • L:G45A
  • L:C46G
  • L:G54T
  • L:C59T
  • L:T61G
  • L:T67A
  • L:G69T
  • L:G88A
  • L:G93A
  • M

  • M:C4T
  • M:A7G
  • M:T68C
  • M:G76A
  • M:A80G
  • M:C85T
  • M:A88G
  • M:C92T
  • M:A107G
  • M:A112G
  • M:A117G
  • M:C119T
  • M:C126T
  • M:A128G
  • M:G136A
  • M:A146G
  • M:G149A
  • M:G156A
  • S

  • S:C12G
  • S:A13G
  • S:T48C
  • S:G54A
  • S:A61G
  • S:C64T
  • S:G67A
  • S:G91A
  • S:G99A
  • S:A118G
  • S:C139T
  • S:C142T
  • S:T157C
  • S:C166T
  • S:C178A
  • S:T182C
  • S:C187A
  • S:G229A
  • Deletions
    L:16-28, L:31-34, L:70, L:71, L:11966, L:11967, L:11981, L:11982, L:12057, M:5289-5299, S:1539-1556, S:1562-1583
    Insertions
    ins_S:14:AAAGGCCTGGAGCTATTCCT, ins_S:8:TCGGGG, ins_S:1530:T, ins_S:0:CACTATGGTCACCGCCTTGAAGGGTTTCACTGACA, ins_S:3:GTCCAGAGTCTACCCCAGATC, ins_M:0:AAAGAATTGAAAGGCAAAGATTTCCATATAT, ins_M:13:ATGATTTGCTGAGAGCTCTGTCTTATCAATATACTTACTTTCTTGTG, ins_M:5168:G, ins_M:8:TATTACTTATTCCTCCGGGTTC, ins_M:5366:TAGCCTGTCTTCCTGTAGTAAAGGAGGTTCAAAATTTAATAAATGTGGGCATATATAAGTTACTACCAGAGAAC, ins_L:12091:CCCTC,...

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:Y7C
  • GPC:I9V
  • GPC:C15Y
  • GPC:G22R
  • GPC:H24S
  • GPC:R28E
  • GPC:D33N
  • GPC:T34V
  • GPC:M35V
  • GPC:N41S
  • GPC:P42Q
  • GPC:S44P
  • GPC:P47L
  • GPC:A51T
  • GPC:S53P
  • GPC:I54V
  • GPC:P58S
  • GPC:L70P
  • NP

  • NP:R15K
  • NP:D44E
  • NP:D116E
  • NP:T124A
  • NP:G125N
  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:S275N
  • NP:S301G
  • NP:V436I
  • RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:I45M
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:I114V
  • RdRp:T163A
  • RdRp:E167G
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K275R
  • RdRp:I279V
  • Deletions
    None
    Insertions
    None

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