This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PBYD.1

South_Africa/LOC_000PBYD.1/1984
M. Zivcec, L. Guerrero, C. Albarino, C. Spiropoulou, P. E. Rollin, T. G. Ksiazek, R. Swanepoel & S. T. Nichol

Centers for Disease Control and Prevention, Viral Special Pathogens Branch

Sample details

Collection date
1984
Earliest release date
2017-09-06
Sampling location
South Africa
Isolate name
SPU41_84_813060_L

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-23 16:00insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2017-09-06
INSDC accession L segment

Submission details

Submission ID
MF511206.1.L
Submitting group
Date submitted
2026-03-23 16:00:01 UTC
Date released
2026-03-23 16:02:34 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs L segment
729
Total inserted nucs L segment
9
Total ambiguous nucs L segment
221
Length L segment
12105 (98.1%)
Variant L segment
False

Nucleotide mutations

Mutations called relative to the NC_005301.3 reference

Substitutions

L segment

  • G32C
  • G56A
  • C63G
  • C64T
  • T65C
  • T70C
  • G71A
  • A73G
  • G93A
  • T131A
  • T151C
  • T160C
  • T163C
  • T229C
  • T253C
  • T254A
  • C265T
  • A268G
Deletions
N/A
Insertions

L segment

ins_11928:TG, ins_12108:TTCATCA

Amino acid substitutions

Substitutions called relative to the NC_005301.3 reference

Substitutions

RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:Y60N
  • RdRp:N206Y
  • RdRp:T265A
  • RdRp:I505T
  • RdRp:A508V
  • RdRp:S596G
  • RdRp:K599R
  • RdRp:D676E
  • RdRp:L765P
  • RdRp:T767A
  • RdRp:R770K
  • RdRp:P774L
  • RdRp:N779S
  • RdRp:I783T
  • RdRp:K809R
  • RdRp:G812E
Deletions
N/A
Insertions
N/A

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