This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PBYD.1

USA/LOC_000PBYD.1/2014-11-17
N. Grubaugh, S. Grewal, N. L. Matteson, K. Gangavarapu, N. Gurfield & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2014-11-17
Earliest release date
2019-01-20
Sampling location
USA (San_Diego,California)
Isolate name
WNV/bird/San_Diego_CA_USA/2014-11-17/W072

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-21 14:54insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2019-01-20
NCBI update date
2019-01-20
INSDC accession
Bioproject accession

Host

Host

Submission details

Submission ID
MH507666.1
Submitting group
Date submitted
2026-02-21 14:54:02 UTC
Date released
2026-02-21 15:14:05 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
91
Total ambiguous nucs
1
Length
10302 (93.4%)

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T428G
  • A564G
  • A630G
  • C660T
  • T699C
  • C933T
  • T1032C
  • C1134T
  • T1442C
  • C1465T
  • A1683G
  • C1750T
  • T1881C
  • T1908C
  • A2208G
  • G2257A
  • G2556A
  • T2637C
    • Deletions
    N/A
    Insertions
    N/A

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:M29I
  • NS1:L169M

    • NS2A

  • NS2A:I129V

    • NS2B

  • NS2B:V103F

    • NS3

  • NS3:R185K

    • capsid

  • capsid:I111S

    • env

  • env:V159A
  • env:L167F
  • env:V431I
    • Deletions
    N/A
    Insertions
    N/A

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