This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PBDJ.1

Display Name: Pakistan/LOC_000PBDJ.1/2020
Chohan, S. M.; Jamil, N.; Naqvi, W. H.; Khan, S.

Submission details

Submission ID
PP801020.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-11 18:18:53 UTC
Date released
2025-03-11 18:23:22 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-03-11 18:18insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
Centers of Excellence in Sciences and Applied Technology, Molecular Biology Division

Alignment and QC metrics S

Completeness S
28.53%
Length S
477
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
58
Total unknown nucs S
0

Sample details

Earliest release date
2024-05-23
Collection country
Pakistan
Collection date
2020
Collection date (lower bound)
2020-01-01
Collection date (upper bound)
2020-12-31
Isolate name
CCHFV-K12-2020-2

Host

Host name scientific
Ixodoidea
Host taxon id
297308

INSDC

INSDC accession S
PP801020.1
NCBI release date
2024-05-23

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:G1030A
  • S:G1033T
  • S:G1036C
  • S:C1048T
  • S:T1051C
  • S:G1054A
  • S:A1057G
  • S:G1066A
  • S:A1072G
  • S:T1096A
  • S:T1099C
  • S:C1100T
  • S:G1102A
  • S:C1141T
  • S:C1147T
  • S:T1153C
  • S:G1165A
  • S:T1174C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:V436I
    • Deletions
    None
    Insertions
    None

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