This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
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Loculus
Crimean-Congo Hemorrhagic Fever Virus
Crimean-Congo Hemorrhagic Fever Virus
Test Dummy Organism
Test organism (without consensus sequences)
Ebola Sudan
Test organism (without alignment)
West Nile Virus
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LOC_000PAQW.1
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Download metadata TSV
Display Name: Turkey/LOC_000PAQW.1/2020-05-08
D'Addiego,
J.; Shah,
S.; Elaldi,
N.; Allen,
D.; Hewson,
R.
Submission details
Submission ID
PP735309.1.L/PP735308.1.M/PP735307.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-11 18:18:53 UTC
Date released
2025-03-11 18:23:22 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-03-11 18:18
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
UK Health Security Agency, Research & Evaluation
Alignment and QC metrics L
Completeness L
37.36%
Length L
4903
Total ambiguous nucs L
10
Total deleted nucs L
0
Total frame shifts L
0
Total inserted nucs L
0
Total SNPs L
480
Total unknown nucs L
369
Alignment and QC metrics M
Completeness M
55.09%
Length M
3055
Total ambiguous nucs M
43
Total deleted nucs M
36
Total frame shifts M
0
Total inserted nucs M
0
Total SNPs M
455
Total unknown nucs M
92
Alignment and QC metrics S
Completeness S
91.87%
Length S
1498
Total ambiguous nucs S
2
Total deleted nucs S
40
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
213
Total unknown nucs S
0
Sample details
Earliest release date
2024-10-26
Collection country
Turkey
Collection date
2020-05-08
Collection date (lower bound)
2020-05-08
Collection date (upper bound)
2020-05-08
Isolate name
CCHFV_1
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession L
PP735309.1
INSDC accession M
PP735308.1
INSDC accession S
PP735307.1
NCBI release date
2024-10-26
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
T
403
C
L:
C
421
A
L:
C
424
A
L:
T
436
C
L:
A
460
G
L:
G
472
A
L:
T
509
C
L:
A
520
G
L:
C
529
T
L:
T
532
C
L:
G
538
T
L:
C
541
T
L:
T
550
G
L:
G
553
A
L:
T
559
C
L:
A
574
G
L:
C
586
T
L:
A
590
G
Show more
M
M:
C
1237
G
M:
A
1277
G
M:
G
1280
A
M:
C
1292
T
M:
T
1299
C
M:
G
1301
A
M:
A
1303
G
M:
G
1304
A
M:
G
1310
A
M:
A
1311
G
M:
T
1325
C
M:
G
1331
A
M:
A
1337
G
M:
C
1352
T
M:
C
1355
T
M:
A
1358
G
M:
G
1359
A
M:
T
1367
C
Show more
S
S:
T
79
C
S:
A
81
G
S:
A
85
G
S:
G
99
A
S:
G
100
A
S:
A
109
G
S:
C
115
T
S:
A
121
G
S:
G
134
A
S:
C
142
T
S:
T
157
C
S:
C
166
T
S:
G
171
A
S:
T
175
A
S:
C
178
A
S:
T
182
C
S:
C
187
T
S:
G
189
A
Show more
Deletions
M:1239-1274, S:1542-1547, S:1564-1588, S:1593, S:1594, S:1597-1603
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
N
394
S
GPC:
K
404
R
GPC:
I
407
V
GPC:
V
423
I
GPC:
K
435
N
GPC:
I
445
T
GPC:
A
448
P
GPC:
H
453
R
GPC:
V
459
T
GPC:
F
482
V
GPC:
D
484
N
GPC:
R
507
K
GPC:
R
517
K
GPC:
S
524
G
GPC:
G
543
D
GPC:
R
579
K
GPC:
N
592
T
GPC:
V
598
T
Show more
NP
NP:
N
9
S
NP:
R
15
K
NP:
V
27
M
NP:
S
39
N
NP:
R
45
K
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
T
124
A
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
K
265
R
NP:
R
270
K
NP:
S
301
G
NP:
A
307
P
NP:
Y
311
F
Show more
RdRp
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
I
176
M
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
218
R
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
V
352
I
RdRp:
N
453
S
RdRp:
I
505
T
RdRp:
A
508
I
RdRp:
V
515
I
RdRp:
A
719
V
RdRp:
R
751
H
RdRp:
R
764
K
RdRp:
K
769
E
RdRp:
R
770
K
Show more
Deletions
None
Insertions
None
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