This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Crimean-Congo Hemorrhagic Fever Virus
Crimean-Congo Hemorrhagic Fever Virus
Test Dummy Organism
Test organism (without consensus sequences)
Ebola Sudan
Test organism (without alignment)
West Nile Virus
Browse
Submit
SeqSets
Login
Loculus
Browse
Submit
SeqSets
Login
Docs
API docs
LOC_000PAN0.1
Download
Download FASTA
Download metadata TSV
Display Name: Turkey/LOC_000PAN0.1/2020-06-08
D'Addiego,
J.; Shah,
S.; Elaldi,
N.; Allen,
D.; Hewson,
R.
Submission details
Submission ID
PP735321.1.L/PP735320.1.M/PP735319.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-11 18:18:53 UTC
Date released
2025-03-11 18:23:22 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-03-11 18:18
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
UK Health Security Agency, Research & Evaluation
Alignment and QC metrics L
Completeness L
41.49%
Length L
5062
Total ambiguous nucs L
13
Total deleted nucs L
0
Total frame shifts L
0
Total inserted nucs L
0
Total SNPs L
531
Total unknown nucs L
25
Alignment and QC metrics M
Completeness M
57.42%
Length M
3055
Total ambiguous nucs M
10
Total deleted nucs M
36
Total frame shifts M
0
Total inserted nucs M
0
Total SNPs M
485
Total unknown nucs M
0
Alignment and QC metrics S
Completeness S
91.75%
Length S
1498
Total ambiguous nucs S
4
Total deleted nucs S
40
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
211
Total unknown nucs S
0
Sample details
Earliest release date
2024-10-26
Collection country
Turkey
Collection date
2020-06-08
Collection date (lower bound)
2020-06-08
Collection date (upper bound)
2020-06-08
Isolate name
CCHFV_5
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession L
PP735321.1
INSDC accession M
PP735320.1
INSDC accession S
PP735319.1
NCBI release date
2024-10-26
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
T
254
A
L:
A
262
G
L:
G
264
A
L:
C
265
T
L:
A
268
G
L:
C
276
T
L:
A
310
G
L:
C
313
T
L:
G
315
A
L:
A
316
G
L:
G
328
A
L:
C
331
T
L:
C
332
T
L:
C
346
T
L:
G
370
A
L:
A
376
G
L:
A
385
T
L:
A
388
G
Show more
M
M:
C
1237
G
M:
A
1277
G
M:
G
1280
A
M:
C
1292
T
M:
T
1299
C
M:
G
1301
A
M:
A
1303
G
M:
G
1304
A
M:
G
1310
A
M:
A
1311
G
M:
T
1325
C
M:
G
1331
A
M:
A
1337
G
M:
C
1352
T
M:
C
1355
T
M:
A
1358
G
M:
G
1359
A
M:
T
1367
C
Show more
S
S:
T
79
C
S:
A
81
G
S:
A
85
G
S:
G
99
A
S:
G
100
A
S:
A
109
G
S:
C
115
T
S:
A
121
G
S:
G
134
A
S:
C
142
T
S:
T
157
C
S:
C
166
T
S:
G
171
A
S:
T
175
A
S:
C
178
A
S:
T
182
C
S:
C
187
T
S:
G
189
A
Show more
Deletions
M:1239-1274, S:1542-1547, S:1564-1588, S:1593, S:1594, S:1597-1603
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
N
394
S
GPC:
K
404
R
GPC:
I
407
V
GPC:
V
423
I
GPC:
K
435
N
GPC:
I
445
T
GPC:
A
448
P
GPC:
H
453
R
GPC:
V
459
T
GPC:
F
482
V
GPC:
D
484
N
GPC:
R
507
K
GPC:
R
517
K
GPC:
S
524
G
GPC:
G
543
D
GPC:
R
579
K
GPC:
E
585
K
GPC:
N
592
T
Show more
NP
NP:
N
9
S
NP:
R
15
K
NP:
V
27
M
NP:
S
39
N
NP:
R
45
K
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
T
124
A
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
K
265
R
NP:
S
301
G
NP:
A
307
P
NP:
Y
311
F
NP:
V
327
I
NP:
N
419
S
NP:
V
436
I
RdRp
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
I
176
M
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
218
R
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
V
352
I
RdRp:
N
453
S
RdRp:
I
505
T
RdRp:
A
508
I
RdRp:
V
515
I
RdRp:
A
719
V
Show more
Deletions
None
Insertions
None
Load sequences
Report an issue with this sequence or metadata
Create GitHub issue